Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40314
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57640.1 68416.m06422 protein kinase family protein contains ...    28   7.2  
At1g78230.1 68414.m09116 leucine-rich repeat family protein            27   9.6  

>At3g57640.1 68416.m06422 protein kinase family protein contains
           similarity to protein kinases
          Length = 356

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 715 FSRPNKITKLLNDGPIPT*Y*LRSFIEKNNNKHYVHKIHLCIKGT*KFS 569
           FS  N++++L ++ P    Y       KNNN H+ HK+ L  K   +FS
Sbjct: 58  FSESNRVSELFDEIPYDWYY-----SGKNNNHHHHHKLLLIKKWRYRFS 101


>At1g78230.1 68414.m09116 leucine-rich repeat family protein
          Length = 676

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = -2

Query: 112 GLLYRPLLQHQLRSTRSVWSGGRHI--FECASV 20
           G LY  L++H L+++ ++++ GRHI  F+C  +
Sbjct: 33  GRLY--LVKHNLKTSAAIFNSGRHIGGFDCGRI 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,884,591
Number of Sequences: 28952
Number of extensions: 292351
Number of successful extensions: 622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)