Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40312
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0819 + 20018496-20019487,20019587-20019721,20019834-200199...    28   5.6  
05_03_0114 + 8539808-8539828,8540327-8541748                           27   9.7  
04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989...    27   9.7  

>04_03_0819 +
           20018496-20019487,20019587-20019721,20019834-20019978,
           20020135-20020416,20020649-20020910,20021028-20021224,
           20021315-20021425,20022341-20022392,20022442-20022584,
           20023121-20023210,20023300-20023800,20024108-20024176,
           20024866-20025011,20025475-20025530,20026140-20026286,
           20027405-20027530,20027608-20027876,20028026-20028127
          Length = 1274

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 273 PHYKRSNL-VYRNRVSHTT*NHNLGLEFLITVIVRIPSRVHLNSQS 139
           PHY  SN  + R ++ HT   H + L  + T +V +  R H+ S +
Sbjct: 508 PHYLESNYCLSRKQILHTKSAHRMFLGSVQTSVVGLSHRFHIPSDA 553


>05_03_0114 + 8539808-8539828,8540327-8541748
          Length = 480

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/22 (45%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 371 FFNG*ASIRILSHHKW-YIQGL 309
           +++G A++R +  HKW Y+QGL
Sbjct: 91  YYHGGAALRTMEDHKWHYLQGL 112


>04_03_1048 -
           21998214-21998413,21998507-21998674,21998758-21998977,
           21999571-21999761,21999869-21999962,22000257-22000500,
           22001314-22001411,22001509-22001600,22001695-22001809,
           22001890-22002036,22003031-22003255
          Length = 597

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 405 FNYSFY-IEYHVSRSWYKSLLFIVKKCSYMY 494
           F +S Y ++Y   +SWY  +L  +  C YM+
Sbjct: 445 FCFSIYSLKYEKHKSWYSWILSSLTSCVYMF 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,677,330
Number of Sequences: 37544
Number of extensions: 204343
Number of successful extensions: 346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)