Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40311
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    27   2.4  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   3.2  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    25   7.5  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   9.9  

>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 105 TNNRLQVFCKHNLQSNVSPENVLAILQVADRMKAADIKEYALKMIV 242
           +NNR Q  C  N+ ++ S EN    + + ++       EY  + +V
Sbjct: 128 SNNRRQTICNFNMANDASKENETPYMVLNNKFNPVLTTEYTQQHLV 173


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/35 (28%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -1

Query: 284 DSLLPLASPQPKMVHDHFKRVFFDVGR--LHPVRD 186
           D+ +   S QP++++D+F+++F  V    + P+R+
Sbjct: 561 DAAIACLSDQPRLLYDYFRQLFAQVTNPPIDPIRE 595


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 88  PFITDSQTIVSKCSASTIYRATCPLRTCSP 177
           P   DS+TIVSK  +++  + T PL+  +P
Sbjct: 328 PATADSKTIVSKTISASTTQQTEPLQQTTP 357


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 78  FQAPIYYGFTNNRLQVFCKHNLQSNVSPEN 167
           FQA  YY  T      F  H+L S ++  N
Sbjct: 109 FQAECYYSLTAYATSAFAGHSLLSTIAVAN 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,996
Number of Sequences: 5004
Number of extensions: 42389
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)