Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40311
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0068 + 14624376-14624975,14625113-14625601 37 0.013
08_01_0197 + 1623454-1624566 36 0.029
08_01_0811 - 7872886-7873261,7873446-7873861,7874253-7874262,787... 35 0.067
04_04_1223 + 31851545-31852609,31854314-31854773,31856201-318562... 34 0.12
11_01_0069 - 557951-558412,558508-558684,559359-559523 32 0.48
05_04_0228 - 19224901-19224991,19225095-19225219,19225293-192254... 32 0.48
10_08_0124 + 14992399-14993478 30 1.5
08_02_1305 - 26013022-26014107 30 1.5
08_01_0200 + 1632883-1633913,1634620-1634677 30 1.5
07_03_1609 + 28128275-28128380,28128941-28129128,28129238-281294... 30 1.5
06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629... 29 2.5
10_08_0119 - 14952786-14953931,14954709-14954831 29 3.3
08_02_0624 - 19434168-19435352 29 3.3
02_01_0651 - 4844263-4844346,4844433-4844498,4844961-4845026,484... 29 4.4
08_01_0808 + 7828453-7829607 28 7.7
04_03_0990 - 21481459-21481933,21482140-21482771 28 7.7
01_06_1640 + 38836977-38836988,38837694-38838047,38838164-388382... 28 7.7
>10_08_0068 + 14624376-14624975,14625113-14625601
Length = 362
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Frame = +3
Query: 9 FDSLLRYIYYGDT-NMPTEDSLYLFQAPIYYGFTNN--RLQVFCKHNLQSNVSPENVLAI 179
F ++L ++Y D M +D + Q + N R+++ C+HNL ++ ++V+ I
Sbjct: 247 FRAMLTFVYTDDLPEMKQQDEAAMAQHLLVAADRYNLERMKLICEHNLSKHIDTDSVVNI 306
Query: 180 LQVADRMKAADIKEYALKMI 239
L +A++ +KE LK +
Sbjct: 307 LVLAEQHSCHMLKEACLKFL 326
>08_01_0197 + 1623454-1624566
Length = 370
Score = 35.9 bits (79), Expect = 0.029
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +3
Query: 69 LYLFQAPIYYGFTNNRLQVFCKHNLQSNVSPENVLAILQVADRMKAADIKEYALKMIV 242
++L +A YG RL++ C+ L +N+ E+V AIL +AD + +KE ++ +V
Sbjct: 277 MHLLKAGDRYGL--ERLRIMCERFLATNLDTEHVSAILGLADLLDLKKLKEACMEFMV 332
>08_01_0811 -
7872886-7873261,7873446-7873861,7874253-7874262,
7874370-7875334
Length = 588
Score = 34.7 bits (76), Expect = 0.067
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Frame = +3
Query: 9 FDSLLRYIYYGDTNMPTEDS------LYLFQAPIYYGFTNNRLQVFCKHNLQSNVSPENV 170
FD+LLRYIY +D L A YG RL++ C+ L+ + NV
Sbjct: 228 FDALLRYIYTDALPAAADDDDMEATWSDLLVAADRYGV--ERLKLICERALRGRLDAGNV 285
Query: 171 LAILQVADRMKAADIKEYALKMI 239
+L +ADR +K+ +K +
Sbjct: 286 ADMLALADRQHCETLKDACIKFM 308
>04_04_1223 +
31851545-31852609,31854314-31854773,31856201-31856250,
31856333-31856463,31856569-31856665,31856759-31856950,
31857121-31857123
Length = 665
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +3
Query: 3 AAFDSLLRYIYYGDTNMPTED---SLYLFQAPIYYGFTNNRLQVFCKHNLQSNVSPENVL 173
AAF++LLR++Y + D ++ L A YG RL++ C+ L + +N
Sbjct: 243 AAFEALLRFVYTDSWPLAGVDVAATVRLLSAADRYGL--ERLRLMCEEKLHEGIDVDNAA 300
Query: 174 AILQVADRMKAADIKEYALKMI 239
+L +A+ + +++ + I
Sbjct: 301 DVLAMAELHHCSQLRDACVAFI 322
>11_01_0069 - 557951-558412,558508-558684,559359-559523
Length = 267
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 129 CKHNLQSNVSPENVLAILQVADRMKAADIKEYALKMIVHH 248
C+ L + V NVL L+VA+ +A +KE A+ +V H
Sbjct: 189 CEARLAAGVEAGNVLRTLEVAELSSSAALKERAMGTVVEH 228
>05_04_0228 -
19224901-19224991,19225095-19225219,19225293-19225410,
19225554-19225618,19225760-19225839,19225942-19226005,
19227341-19227480,19227571-19227694,19227781-19227840,
19227922-19227990,19228139-19228288,19229182-19229289,
19229573-19229648,19229960-19230054,19231729-19231803,
19231923-19232043,19232136-19232308,19232647-19232813,
19232944-19233301
Length = 752
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/81 (20%), Positives = 40/81 (49%)
Frame = +3
Query: 9 FDSLLRYIYYGDTNMPTEDSLYLFQAPIYYGFTNNRLQVFCKHNLQSNVSPENVLAILQV 188
F+ ++R+IY G + ++ S L +A Y L+ C++ + +V+ +NV + +
Sbjct: 637 FELMMRFIYTGSVEVTSDISQDLLRAADQYLLEG--LKRLCEYTIAQDVNVDNVSDMYDL 694
Query: 189 ADRMKAADIKEYALKMIVHHF 251
++ A ++ + I+ F
Sbjct: 695 SEAFHAMSLRHTCVLFILEQF 715
>10_08_0124 + 14992399-14993478
Length = 359
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +3
Query: 9 FDSLLRYIYYGDTNMPTEDSLYLFQAPIYYG-FTNNRLQVFCKHNLQSNVSPENVLAILQ 185
F +LL +IY +D + Q + ++ +RL++ C+ L S + +V+ +L
Sbjct: 238 FKALLVFIYTDTWPEIDQDETTMVQLLVAANKYSLSRLKIMCEDRLCSYIDTSSVVTMLM 297
Query: 186 VADRMKAADIKEYALKMI 239
+AD+ + +K+ +
Sbjct: 298 LADKYQCHGLKKVCFNFL 315
>08_02_1305 - 26013022-26014107
Length = 361
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 111 NRLQVFCKHNLQSNVSPENVLAILQVADRMKAADIK 218
+RL++ C L N++P++V AIL A+ ++K
Sbjct: 283 DRLKIMCGQRLLDNMTPDSVAAILVCAEMYNCPELK 318
>08_01_0200 + 1632883-1633913,1634620-1634677
Length = 362
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 114 RLQVFCKHNLQSNVSPENVLAILQVADRMKAADIKEYALKMIVHH 248
RL+V C+ L+ ++ E V+ + +A++ ++KE L+ I H
Sbjct: 276 RLRVICERVLRRSLGVETVIDTMALAEQHSCGELKEACLEFIDSH 320
>07_03_1609 +
28128275-28128380,28128941-28129128,28129238-28129415,
28130753-28130973
Length = 230
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 52 CPQKTLYIFSKLPFITDSQTIVSKCSA--STIYRATCPLRTC 171
CP T + SK +TD T+ K S ST++ + C LR C
Sbjct: 173 CPCDTGEVVSKNTLMTDETTVSKKPSENYSTVFSSMCELRFC 214
>06_02_0131 +
12161268-12161781,12162123-12162867,12162950-12162986,
12163083-12163216,12163298-12163625
Length = 585
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +3
Query: 6 AFDSLLRYIYYGDT-NMPTEDSLYLFQ-APIYYGFTNNRLQVFCKHNLQSNVSPENVLAI 179
AF+ +L Y+Y + +M + LF A Y F R+ +VSP +
Sbjct: 412 AFEKVLEYMYTDNLEHMDPNQAEELFDIASRYLLFPLKRVVADILLPYLEHVSPAELCHW 471
Query: 180 LQVADRMKAADIKEYALKMIVHHFGLWRGKRQ*R 281
L ++D I+EY L +I +F ++ R+ R
Sbjct: 472 LMLSDIYDVVKIREYCLDIIACNFEMFADTREFR 505
>10_08_0119 - 14952786-14953931,14954709-14954831
Length = 422
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 9 FDSLLRYIYYGDTNMPTEDSLYLFQAPIYYG--FTNNRLQVFCKHNLQSNVSPENVLAIL 182
F +LL +IY +D + Q + ++ +RL++ C+ L S + +V+ +L
Sbjct: 300 FKALLVFIYTDTWPEIGQDETTMVQQLLVAANKYSLSRLKIMCEDKLCSYIDTSSVVTML 359
Query: 183 QVADRMKAADIKEYALKMI 239
+AD+ + +K+ +
Sbjct: 360 MLADKYQCHGLKKVCFNFL 378
>08_02_0624 - 19434168-19435352
Length = 394
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 102 FTNNRLQVFCKHNLQSNVSPENVLAILQVADRMKAADIKEYALKMI 239
F R+++ C+ L + N A L++ADR +KE ++ I
Sbjct: 307 FDLERMRLLCEDALWETIDVANAAATLRLADRHHCPQLKELCMEYI 352
>02_01_0651 -
4844263-4844346,4844433-4844498,4844961-4845026,
4845113-4845168,4845340-4845412,4845538-4845622,
4845710-4845822,4845957-4846029,4846509-4846907,
4846999-4847117
Length = 377
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -2
Query: 271 LLPRHNPKWCTIILSAYSLMSAAFILSAT*SMASTFSGDTLLCRLCLQNTWRRL 110
++P + P W L LM+A F L + + + G +L LCL TW+ L
Sbjct: 166 IVPEYTPGWVYFWL----LMAAGFGLFISEEALNVWVGISLARSLCLDGTWQSL 215
>08_01_0808 + 7828453-7829607
Length = 384
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 117 LQVFCKHNLQSNVSPENVLAILQVADRMKAADIKEYALKMI 239
L+ C+ L ++S +NV I+ +AD+ +KE +K I
Sbjct: 304 LKTICEKALCMSLSVDNVATIVALADQHNCGRLKEACVKFI 344
>04_03_0990 - 21481459-21481933,21482140-21482771
Length = 368
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 114 RLQVFCKHNLQSNVSPENVLAILQVADRMKAADIKEYALKMI 239
RL++ C+H L V+ V+A+L A + +KE L+ +
Sbjct: 287 RLRLVCEHKLCEYVNGRTVVAMLAFAGEHQCNGLKEKCLRFL 328
>01_06_1640 +
38836977-38836988,38837694-38838047,38838164-38838294,
38838554-38838860,38839036-38839349,38839507-38839645
Length = 418
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 102 FTNNRLQVFCKHNLQSNV-SPENVLAILQVADRMKAADIKEYALKMIVHHF 251
F+ L+ C + L++++ SPENV+ ILQ+A A + +MI+ F
Sbjct: 186 FSVPSLKRVCINQLETSLLSPENVVDILQLARLCDAPRLSLVCTRMIIGDF 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,010,177
Number of Sequences: 37544
Number of extensions: 294219
Number of successful extensions: 831
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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