Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40311
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46757| Best HMM Match : BACK (HMM E-Value=4.5) 51 1e-06
SB_53829| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_39453| Best HMM Match : BTB (HMM E-Value=3.1e-36) 42 6e-04
SB_44086| Best HMM Match : BTB (HMM E-Value=1.8e-23) 41 8e-04
SB_19151| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.030
SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0) 30 1.5
SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16) 30 2.0
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_33427| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_28421| Best HMM Match : Oxysterol_BP (HMM E-Value=4.5e-11) 28 7.9
>SB_46757| Best HMM Match : BACK (HMM E-Value=4.5)
Length = 81
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/42 (52%), Positives = 32/42 (76%)
Frame = +3
Query: 126 FCKHNLQSNVSPENVLAILQVADRMKAADIKEYALKMIVHHF 251
FCK NL+ NVS +NV+ IL+ A + A D+K++AL +IVH+F
Sbjct: 2 FCKENLEKNVSFQNVVEILEAASTIGAVDMKKHALDIIVHNF 43
>SB_53829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +3
Query: 6 AFDSLLRYIYYGDTNMPTEDSLY 74
AFDSLL+YIY+G+ MP EDSLY
Sbjct: 159 AFDSLLKYIYFGNVTMPPEDSLY 181
>SB_39453| Best HMM Match : BTB (HMM E-Value=3.1e-36)
Length = 398
Score = 41.5 bits (93), Expect = 6e-04
Identities = 26/80 (32%), Positives = 40/80 (50%)
Frame = +3
Query: 9 FDSLLRYIYYGDTNMPTEDSLYLFQAPIYYGFTNNRLQVFCKHNLQSNVSPENVLAILQV 188
F +L+++Y G+T + L A Y RL+V C+ L SN++ ENV +L +
Sbjct: 274 FQEMLKFVYTGNTPQIQGMADDLLAAADKYDL--ERLKVMCEDVLCSNLTVENVCDVLIL 331
Query: 189 ADRMKAADIKEYALKMIVHH 248
AD A +K AL + H
Sbjct: 332 ADMHNATQLKSQALDFVNSH 351
>SB_44086| Best HMM Match : BTB (HMM E-Value=1.8e-23)
Length = 417
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/78 (25%), Positives = 41/78 (52%)
Frame = +3
Query: 6 AFDSLLRYIYYGDTNMPTEDSLYLFQAPIYYGFTNNRLQVFCKHNLQSNVSPENVLAILQ 185
A +LRY YY + + +++ + Y F L+ C H LQ N+ P++VL +L
Sbjct: 81 ALSEMLRYAYYDEVKLTGSNAMAVMYLAEKYNFPG--LKEKCSHYLQENLEPKDVLFVLP 138
Query: 186 VADRMKAADIKEYALKMI 239
A +++ +++ + ++I
Sbjct: 139 EAMKIQDENLQSHCWELI 156
>SB_19151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 35.9 bits (79), Expect = 0.030
Identities = 23/83 (27%), Positives = 35/83 (42%)
Frame = +3
Query: 6 AFDSLLRYIYYGDTNMPTEDSLYLFQAPIYYGFTNNRLQVFCKHNLQSNVSPENVLAILQ 185
A +LL Y+Y + ++ + A F + C L+ + P N L IL
Sbjct: 133 ALQALLDYVYTSSIEIFDDNVEEVLNAAC--AFQIPEIINVCSEFLKEQLHPSNCLGILA 190
Query: 186 VADRMKAADIKEYALKMIVHHFG 254
+ADR ++ A K V HFG
Sbjct: 191 LADRFSCEELANEAHKYTVKHFG 213
>SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 823
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 55 PQKTLYIFSKLPFITDSQTIVSKCSASTIYRATCPLRTCSPYFRS 189
P++TL L + +V K +STI+ L CSPYFR+
Sbjct: 42 PKQTLDSLEALRQCEELCDVVIKVGSSTIHAHRVVLAACSPYFRA 86
>SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16)
Length = 501
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +3
Query: 9 FDSLLRYIYYGDTNMPTEDSLYLFQAPIYYGFTNNRLQVFCKHNLQSNVSPENVLAIL 182
F +LRY+YYG+ + + + + Y LQV C L + +VL L
Sbjct: 148 FSEMLRYVYYGEVELSESNVMEIMYLSEQYDLPG--LQVNCSQYLNEMLQANDVLHCL 203
>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 6 AFDSLLRYIYYGD---TNMPTEDSLYLFQAPIYYGFTNNRLQVFCKHNLQSNVSPENVLA 176
AFD+LLRYIY G E + L YGF L+ + L++ + +NV
Sbjct: 83 AFDALLRYIYTGKMFLAEYREEIVMELLGLAHKYGFL--ALESAIQGYLKAILDVKNVCL 140
Query: 177 ILQVADRMKAADIKEYALKMI 239
I +A + D+ E L+ +
Sbjct: 141 IFDMASLYQLKDLYETCLEFL 161
>SB_33427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 11 RLSPALHLLRRHEYAHRRLSISFPSSHLL 97
+L AL LR+H+ H++ S++F + HL+
Sbjct: 432 KLEKALAHLRKHKKKHKQTSVNFSALHLI 460
>SB_28421| Best HMM Match : Oxysterol_BP (HMM E-Value=4.5e-11)
Length = 378
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 82 KLPFITDSQTIVSKCSASTIYRATCPLRTCSPYFRSRTG*R 204
K+PF D +T ++ TI+ P RT P R R+ R
Sbjct: 14 KMPFYGDQETEFNRLREHTIFTKRRPRRTALPATRERSSIR 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,495,499
Number of Sequences: 59808
Number of extensions: 334597
Number of successful extensions: 848
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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