Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40311
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28941-4|AAM98024.1|  484|Caenorhabditis elegans Temporarily ass...    28   5.2  
U28941-3|AAM98025.1|  799|Caenorhabditis elegans Temporarily ass...    28   5.2  
U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily ass...    28   5.2  
U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily ass...    28   5.2  
Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U28941-4|AAM98024.1|  484|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform c protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 272 PLASPQPKMVHDHFKRVFFDVGRLHPVRDLKYGE 171
           P+  P P  +  H ++ +FD  +L P    +Y +
Sbjct: 288 PIQQPSPLQIQTHPQQPYFDFSQLSPASQARYNQ 321


>U28941-3|AAM98025.1|  799|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform d protein.
          Length = 799

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 272 PLASPQPKMVHDHFKRVFFDVGRLHPVRDLKYGE 171
           P+  P P  +  H ++ +FD  +L P    +Y +
Sbjct: 288 PIQQPSPLQIQTHPQQPYFDFSQLSPASQARYNQ 321


>U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform a protein.
          Length = 1091

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 272 PLASPQPKMVHDHFKRVFFDVGRLHPVRDLKYGE 171
           P+  P P  +  H ++ +FD  +L P    +Y +
Sbjct: 288 PIQQPSPLQIQTHPQQPYFDFSQLSPASQARYNQ 321


>U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 149, isoform b protein.
          Length = 1107

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 272 PLASPQPKMVHDHFKRVFFDVGRLHPVRDLKYGE 171
           P+  P P  +  H ++ +FD  +L P    +Y +
Sbjct: 288 PIQQPSPLQIQTHPQQPYFDFSQLSPASQARYNQ 321


>Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 100 DSQTIVSKCSASTIYRATCPLRTCSP 177
           DSQ ++      T YR  C  R C+P
Sbjct: 105 DSQRVIDSSEILTAYREACQRRQCAP 130


>Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 100 DSQTIVSKCSASTIYRATCPLRTCSP 177
           DSQ ++      T YR  C  R C+P
Sbjct: 105 DSQRVIDSSEILTAYREACQRRQCAP 130


>Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 100 DSQTIVSKCSASTIYRATCPLRTCSP 177
           DSQ ++      T YR  C  R C+P
Sbjct: 105 DSQRVIDSSEILTAYREACQRRQCAP 130


>Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 100 DSQTIVSKCSASTIYRATCPLRTCSP 177
           DSQ ++      T YR  C  R C+P
Sbjct: 105 DSQRVIDSSEILTAYREACQRRQCAP 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,458,829
Number of Sequences: 27780
Number of extensions: 246715
Number of successful extensions: 753
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)