Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40311
(668 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01640.2 68414.m00082 speckle-type POZ protein-related contai... 37 0.011
At1g01640.1 68414.m00081 speckle-type POZ protein-related contai... 37 0.011
At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family pr... 36 0.024
At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family pr... 31 0.69
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 31 0.92
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 31 0.92
At5g42690.1 68418.m05200 expressed protein contains Pfam profile... 29 2.8
At1g49340.2 68414.m05531 phosphatidylinositol 3- and 4-kinase fa... 28 6.5
At1g49340.1 68414.m05530 phosphatidylinositol 3- and 4-kinase fa... 28 6.5
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter... 27 8.5
At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containi... 27 8.5
>At1g01640.2 68414.m00082 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/78 (30%), Positives = 40/78 (51%)
Frame = +3
Query: 15 SLLRYIYYGDTNMPTEDSLYLFQAPIYYGFTNNRLQVFCKHNLQSNVSPENVLAILQVAD 194
SLL ++Y G+ P L+ A Y + LQ C+++ +++S NVL IL++A
Sbjct: 80 SLLEFLYSGNLKAPYNQYRSLYLAADKYDISY--LQDVCRNHFIASLSSRNVLDILELAS 137
Query: 195 RMKAADIKEYALKMIVHH 248
+K+ A+ IV H
Sbjct: 138 IPCDTILKDAAINHIVKH 155
>At1g01640.1 68414.m00081 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/78 (30%), Positives = 40/78 (51%)
Frame = +3
Query: 15 SLLRYIYYGDTNMPTEDSLYLFQAPIYYGFTNNRLQVFCKHNLQSNVSPENVLAILQVAD 194
SLL ++Y G+ P L+ A Y + LQ C+++ +++S NVL IL++A
Sbjct: 80 SLLEFLYSGNLKAPYNQYRSLYLAADKYDISY--LQDVCRNHFIASLSSRNVLDILELAS 137
Query: 195 RMKAADIKEYALKMIVHH 248
+K+ A+ IV H
Sbjct: 138 IPCDTILKDAAINHIVKH 155
>At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 710
Score = 35.9 bits (79), Expect = 0.024
Identities = 17/81 (20%), Positives = 43/81 (53%)
Frame = +3
Query: 9 FDSLLRYIYYGDTNMPTEDSLYLFQAPIYYGFTNNRLQVFCKHNLQSNVSPENVLAILQV 188
F+ ++R+IY G ++ E S L +A Y L+ C++ + +++ E++ + ++
Sbjct: 592 FELMMRFIYTGSVDITNEISKDLLRAADQYLLEG--LKRLCEYTIAQDITLESIGDMYEL 649
Query: 189 ADRMKAADIKEYALKMIVHHF 251
++ A +++ + I+ HF
Sbjct: 650 SEAFHAMSLRQACIMFILEHF 670
>At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 709
Score = 31.1 bits (67), Expect = 0.69
Identities = 16/81 (19%), Positives = 38/81 (46%)
Frame = +3
Query: 9 FDSLLRYIYYGDTNMPTEDSLYLFQAPIYYGFTNNRLQVFCKHNLQSNVSPENVLAILQV 188
F+ ++++IY G N+ + L A Y + Q C++ + + +N+ + ++
Sbjct: 591 FELMMKFIYSGRINIAKHLAKDLLVAADQYLLEGLKRQ--CEYTIAQEICLDNIPEMYEL 648
Query: 189 ADRMKAADIKEYALKMIVHHF 251
AD A+ ++ ++ HF
Sbjct: 649 ADTFNASALRRACTLFVLEHF 669
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 30.7 bits (66), Expect = 0.92
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 153 VSPENVLAILQVADRMKAADIKEYALKMIVHH 248
V P N + +L++AD + A D+K+Y +++ +
Sbjct: 582 VEPRNAIQLLEIADSLGAEDLKKYCEDIVIRN 613
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 30.7 bits (66), Expect = 0.92
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 153 VSPENVLAILQVADRMKAADIKEYALKMIVHH 248
V P N + +L++AD + A D+K+Y +++ +
Sbjct: 579 VEPRNAIQLLEIADSLGAEDLKKYCEDIVIRN 610
>At5g42690.1 68418.m05200 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547; expression
supported by MPSS
Length = 512
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 597 YGLIFSFRFISFHRV*NHNKSKEVSLQKKRRSF*SL-LLRQMARL 466
YG+ SFR R N + +E SL + R S SL L+RQ+ RL
Sbjct: 251 YGICSSFRRRDIGRYKNFSDVEEASLNQNRTSSSSLFLIRQLKRL 295
>At1g49340.2 68414.m05531 phosphatidylinositol 3- and 4-kinase family
protein contains similarity to phosphatidylinositol
4-kinase 230 GI:2326227 from [Homo sapiens], from [Bos
taurus] GI:2198791; contains Pfam profiles PF00454:
Phosphatidylinositol 3- and 4-kinase, PF00613:
Phosphoinositide 3-kinase family, accessory domain
Length = 2028
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 259 HNPKWCTIILSAYSLMSAAFILSAT*SMASTFSGDTLLCRLCLQNTWRR 113
++P W + S Y + +I+ + S A S L +LC NTW+R
Sbjct: 958 NDPAWTAAVRSLYQKVVREWIIISL-SYAPCTSQGLLQDKLCKANTWQR 1005
>At1g49340.1 68414.m05530 phosphatidylinositol 3- and 4-kinase family
protein contains similarity to phosphatidylinositol
4-kinase 230 GI:2326227 from [Homo sapiens], from [Bos
taurus] GI:2198791; contains Pfam profiles PF00454:
Phosphatidylinositol 3- and 4-kinase, PF00613:
Phosphoinositide 3-kinase family, accessory domain
Length = 2028
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 259 HNPKWCTIILSAYSLMSAAFILSAT*SMASTFSGDTLLCRLCLQNTWRR 113
++P W + S Y + +I+ + S A S L +LC NTW+R
Sbjct: 958 NDPAWTAAVRSLYQKVVREWIIISL-SYAPCTSQGLLQDKLCKANTWQR 1005
>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 243
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 6 AFDSLLRYIYYGDTNMPTEDSLYLFQAPIYYG-FTNNRLQVFCKHNLQSNVSPENVLAIL 182
++D+L ++YY T D + + L+ +C+ L + +SP+N L
Sbjct: 116 SYDALRTFVYYLYTAEACLDEQMACDLLVMSEKYQVKHLKSYCERFLVTKLSPDNSLMTY 175
Query: 183 QVADRMKAADIKEYALKMIVHH 248
A + A + + AL IV +
Sbjct: 176 AFAHQHNAKHVLDAALSQIVEN 197
>At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 660
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +3
Query: 102 FTNNRLQVFCKHNLQSNVSPENVLAILQVADRMK--AADIKEYALKMIV 242
F +R Q HNL+ VS +VLA+ + DR++ +++IK++ M V
Sbjct: 139 FCWSRKQKKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTV 187
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,680,286
Number of Sequences: 28952
Number of extensions: 226967
Number of successful extensions: 619
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -