Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40310
         (744 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6MWV1 Cluster: PE-PGRS FAMILY-RELATED PROTEIN; n=3; My...    34   4.2  

>UniRef50_Q6MWV1 Cluster: PE-PGRS FAMILY-RELATED PROTEIN; n=3;
           Mycobacterium tuberculosis complex|Rep: PE-PGRS
           FAMILY-RELATED PROTEIN - Mycobacterium tuberculosis
          Length = 104

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 417 IGSHNSTRISLTAILMICGGGPLLYALASSIVCTPRPVQHTICG---SISGYFRD*P 578
           IG+ N+     T  L+  G   +  A+A+   CT RP++H++ G   S+SG  R  P
Sbjct: 25  IGAANAAAAGSTTALLTAGADEVSAAIAAYSECTARPIRHSVRGRRRSMSGSCRPWP 81


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,851,785
Number of Sequences: 1657284
Number of extensions: 14624598
Number of successful extensions: 33751
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 32773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33749
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)