Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40310
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    30   0.40 
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    27   2.1  
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    27   2.8  
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    27   3.7  

>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 422 ISQFHSHLTYRNSNDLRRRSPFVCXGLVYRMHAT 523
           +S FHS + +      R++S F C  LV ++HA+
Sbjct: 95  LSNFHSQIIHLRFKGTRQQSEFFCDRLVRQLHAS 128


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = -1

Query: 435 WNCEIRCQTEIMTVASNYLSSSTTMF----IRELQALDEPQM*HNEPSQF--RCISYYLT 274
           W CE+    +  T+   Y   S + F        ++ DEP M  NE   +  RC+S++ T
Sbjct: 133 WECEVDSNNKT-TIDLKYWYCSCSQFSYNAFNSSRSFDEP-MPKNEQETWGGRCLSHHPT 190

Query: 273 LCNCAVNFVYEAICHS 226
           +C+  +       CH+
Sbjct: 191 ICSHILAASILRACHN 206


>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 136 PLKICEGRRRCISASQFVSADMDLQRNETPKQKYKRR 26
           PLK  E     +S  ++V    +L +N+ PK   KRR
Sbjct: 221 PLKWGEDELTIMSKKEYVDMKAELHKNDPPKFSSKRR 257


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 64  AGPCPRLQIGSRRCIGAAPH 123
           +G CP L I SR  +GAA H
Sbjct: 118 SGECPPLYINSRDILGAASH 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,538
Number of Sequences: 5004
Number of extensions: 60066
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)