Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40310
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0567 + 18585556-18586113                                         29   3.9  
09_02_0461 + 9577003-9577065,9577471-9577568,9578339-9578394,957...    29   3.9  
01_06_1487 - 37715421-37715942                                         29   3.9  
05_04_0204 - 19022329-19023990                                         29   5.2  
03_06_0020 - 31081330-31082219,31083140-31083632                       29   5.2  
10_02_0128 + 5567202-5568107,5568587-5568968,5570356-5570423,557...    28   9.0  

>09_04_0567 + 18585556-18586113
          Length = 185

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 21  PSRRLYFCLGVSLRCRSMSALTNWLAEMHRRRPSQIFSGN 140
           P     F    S+RC  ++A+  W AEM  RR ++ F  N
Sbjct: 126 PDEWTLFRQETSIRCAPLAAVAAWAAEMVERRCAERFRQN 165


>09_02_0461 +
           9577003-9577065,9577471-9577568,9578339-9578394,
           9578446-9578672,9578956-9579045
          Length = 177

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -2

Query: 614 VDEDKFQLGQSGWSVAEVSRDGPADSV 534
           ++ED+F LG  GWS++EVS +G   S+
Sbjct: 93  LNEDRF-LGPRGWSMSEVSGNGQTKSL 118


>01_06_1487 - 37715421-37715942
          Length = 173

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 581 GWSVAEVSRDGPADSVLYRP-WRAYDRRGQXIQKGTS 474
           G  VA VSRDGPA S   RP W  ++  G  + +G S
Sbjct: 134 GGPVAMVSRDGPAGS---RPRWAGWEEAGVQLSRGGS 167


>05_04_0204 - 19022329-19023990
          Length = 553

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 70  PCPRLQIGSRRCIGAAPHKSSAEITL*R 153
           P PRL +  RRC+ +APH+    + L R
Sbjct: 7   PLPRLLLLRRRCLSSAPHRDRRFLPLLR 34


>03_06_0020 - 31081330-31082219,31083140-31083632
          Length = 460

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +1

Query: 106 IGAAPHKSSAEITL*RLHCTSFSDG*RFDTFNRFGHRFLAAVTDGFINEIDSAITKR*VI 285
           + A P   +AE+    +H T+  DG   D   +  ++ + A +       +  I +    
Sbjct: 47  VAALPPGGAAELRQRGIHLTAIPDGLAEDEDRKDLNKLIDAYSRHMPGHFERLIGEIEAG 106

Query: 286 GNAPKLRWLV 315
           G  PK+RWLV
Sbjct: 107 GGRPKVRWLV 116


>10_02_0128 +
           5567202-5568107,5568587-5568968,5570356-5570423,
           5570899-5571034,5571206-5571283,5571623-5571747
          Length = 564

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 55  RYVAGPCPRLQIGSRRCIGAAPHKSSAEI 141
           R   GPCP   IG+   IG  PH+S A +
Sbjct: 31  RLPPGPCPLPLIGNLLDIGDLPHRSFARL 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,211,804
Number of Sequences: 37544
Number of extensions: 422793
Number of successful extensions: 1043
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)