Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40310
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)                   29   3.0  
SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_50284| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
          Length = 516

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
 Frame = -3

Query: 625 TRSMSTRINFN*GNQDGQSRKYPEMDPQIVCCTGR----GVHTIDEAXAYKRGPPPQIIR 458
           T ++S R+ F   ++ G      E+D +I   TG+    G  +  E  +     P Q I 
Sbjct: 273 TTALSGRVTFRLEDEAGDRELEAEVDREIEAITGKEQSPGTDSEGEDPSRADDNPDQAIN 332

Query: 457 IAVSEMRVEL*DPMPNRDNDGRFKLLVFKYNDV 359
            + S ++       P RD     ++ V KY ++
Sbjct: 333 QSASSVQFPPLSSSPGRDEHCGLRIAVMKYVNI 365


>SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 611 DEDKFQLGQSGWSVAEVSRDGPADSVL-YRPWRAYDRRG 498
           D   F LGQ+G+SV +    GP + VL Y   RA + RG
Sbjct: 860 DPLSFTLGQAGYSVYKYVPYGPVEDVLPYLSRRAMENRG 898


>SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 586 NQDGQSRKYPEMDPQIVCCTGRGVHTIDEAXAYKR 482
           + D QS    + DP ++CC G  +H   EA A K+
Sbjct: 329 HMDRQSVSCRQTDPVVICCFGH-IHRNPEAEAEKK 362


>SB_50284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 243 EAICHSGQEPMPESIECVKTLAVAE 169
           E ICHS   P+PE +  V  +A A+
Sbjct: 160 EVICHSAGFPLPEEVPPVPLIATAD 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,521,629
Number of Sequences: 59808
Number of extensions: 483152
Number of successful extensions: 1054
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)