Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40310
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23518-8|AAO38654.1|  400|Caenorhabditis elegans Nuclear hormone...    29   3.5  
U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone...    29   3.5  
U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone...    29   3.5  
U23518-5|AAO38653.1|  448|Caenorhabditis elegans Nuclear hormone...    29   3.5  
U23518-4|ABB88231.1|  450|Caenorhabditis elegans Nuclear hormone...    29   3.5  
AF083234-1|AAD03692.1|  400|Caenorhabditis elegans nuclear recep...    29   3.5  
AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear recep...    29   3.5  
AL132948-12|CAD31814.1|  283|Caenorhabditis elegans Hypothetical...    28   8.0  

>U23518-8|AAO38654.1|  400|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform b protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 426 EIRCQTEIMTVASNYLSSSTTMFI 355
           E+ CQTE+ T++S+  S ST  F+
Sbjct: 81  EVECQTEVSTISSHPTSPSTLPFV 104


>U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform c protein.
          Length = 440

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 426 EIRCQTEIMTVASNYLSSSTTMFI 355
           E+ CQTE+ T++S+  S ST  F+
Sbjct: 121 EVECQTEVSTISSHPTSPSTLPFV 144


>U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform d protein.
          Length = 446

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 426 EIRCQTEIMTVASNYLSSSTTMFI 355
           E+ CQTE+ T++S+  S ST  F+
Sbjct: 127 EVECQTEVSTISSHPTSPSTLPFV 150


>U23518-5|AAO38653.1|  448|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform a protein.
          Length = 448

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 426 EIRCQTEIMTVASNYLSSSTTMFI 355
           E+ CQTE+ T++S+  S ST  F+
Sbjct: 127 EVECQTEVSTISSHPTSPSTLPFV 150


>U23518-4|ABB88231.1|  450|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform e protein.
          Length = 450

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 426 EIRCQTEIMTVASNYLSSSTTMFI 355
           E+ CQTE+ T++S+  S ST  F+
Sbjct: 129 EVECQTEVSTISSHPTSPSTLPFV 152


>AF083234-1|AAD03692.1|  400|Caenorhabditis elegans nuclear receptor
           NHR-21b protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 426 EIRCQTEIMTVASNYLSSSTTMFI 355
           E+ CQTE+ T++S+  S ST  F+
Sbjct: 81  EVECQTEVSTISSHPTSPSTLPFV 104


>AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear receptor
           NHR-21a protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 426 EIRCQTEIMTVASNYLSSSTTMFI 355
           E+ CQTE+ T++S+  S ST  F+
Sbjct: 139 EVECQTEVSTISSHPTSPSTLPFV 162


>AL132948-12|CAD31814.1|  283|Caenorhabditis elegans Hypothetical
           protein Y39B6A.16 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 291 ISYYLTLCNCAVNFVYEAICHSGQEPMPESIECVKT 184
           I +YLT C        E +CH  +E   + I+C KT
Sbjct: 17  IEFYLTNCMHMFCIECERLCHPPEEEPLKCIQCSKT 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,989,806
Number of Sequences: 27780
Number of extensions: 352531
Number of successful extensions: 871
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)