Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40310
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    26   0.32 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +2

Query: 332 SSKACNSRINIVVLEDK*FEATVIISVWHRISQFHSHLTYRNSNDLRRRSPFVC--XGLV 505
           +S AC S   +  +E+K ++  +    + + + + SHL    S+      P+ C   G  
Sbjct: 44  TSPACGSETPLTNIEEKTYQCLLCQKAFDQKNLYQSHL---RSHGKEGEDPYRCNICGKT 100

Query: 506 YRMHATAGTAHYLRVHLGILP 568
           + + A   T HY R H G  P
Sbjct: 101 FAVPARL-TRHY-RTHTGEKP 119


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
 Frame = -2

Query: 650 FIIELYYEDAVDVDEDKF--------QLGQSGWSVAEVSRDGPADSVLYRPWR 516
           FIIE  Y   +DV + +         QL   G      SRDGP    L  P R
Sbjct: 88  FIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPR 140


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 389 EATVIISVWHRISQFHSHLT 448
           EA   + V H  SQ H HLT
Sbjct: 657 EAEPAVIVQHTQSQLHLHLT 676


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +3

Query: 192 HIQSIRASVLGRCDRWLHKRN*QRNYKALSNRK 290
           H Q + ++V   C +     N   N+K++ +R+
Sbjct: 395 HFQPLNSAVCALCHKVFRTLNSLNNHKSIYHRR 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,289
Number of Sequences: 438
Number of extensions: 4686
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)