Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40310
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61910.3 68418.m07772 expressed protein                             30   1.4  
At5g61910.2 68418.m07771 expressed protein                             30   1.4  
At5g61910.1 68418.m07770 expressed protein                             30   1.4  
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ...    29   4.3  
At2g02990.1 68415.m00251 ribonuclease 1 (RNS1) identical to ribo...    28   5.7  
At1g66300.1 68414.m07529 F-box family protein contains F-box dom...    28   5.7  
At5g23190.1 68418.m02712 cytochrome P450 family protein contains...    28   7.5  
At5g02990.1 68418.m00243 kelch repeat-containing F-box family pr...    27   9.9  

>At5g61910.3 68418.m07772 expressed protein
          Length = 742

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
 Frame = +2

Query: 5   DISPGAFSSLIFLFRSFVTLQVHVRAYKLARGDASAPPLTNLQRKLRSDVYIVRHSATAN 184
           ++SP    SL+ LFRSF + ++ +  ++LA   ASAP   + + +  +  ++   S+  +
Sbjct: 174 ELSPHQVMSLLSLFRSFTSPELDLLPHRLA-SRASAPRTLSFEERFIAATHLRNASSVLD 232

Query: 185 VLT-HSIDSGIGS 220
            L+   ++  +GS
Sbjct: 233 PLSARHVEPRLGS 245


>At5g61910.2 68418.m07771 expressed protein
          Length = 738

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
 Frame = +2

Query: 5   DISPGAFSSLIFLFRSFVTLQVHVRAYKLARGDASAPPLTNLQRKLRSDVYIVRHSATAN 184
           ++SP    SL+ LFRSF + ++ +  ++LA   ASAP   + + +  +  ++   S+  +
Sbjct: 170 ELSPHQVMSLLSLFRSFTSPELDLLPHRLA-SRASAPRTLSFEERFIAATHLRNASSVLD 228

Query: 185 VLT-HSIDSGIGS 220
            L+   ++  +GS
Sbjct: 229 PLSARHVEPRLGS 241


>At5g61910.1 68418.m07770 expressed protein
          Length = 738

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
 Frame = +2

Query: 5   DISPGAFSSLIFLFRSFVTLQVHVRAYKLARGDASAPPLTNLQRKLRSDVYIVRHSATAN 184
           ++SP    SL+ LFRSF + ++ +  ++LA   ASAP   + + +  +  ++   S+  +
Sbjct: 170 ELSPHQVMSLLSLFRSFTSPELDLLPHRLA-SRASAPRTLSFEERFIAATHLRNASSVLD 228

Query: 185 VLT-HSIDSGIGS 220
            L+   ++  +GS
Sbjct: 229 PLSARHVEPRLGS 241


>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
           (UBP20) identical to ubiquitin-specific protease 20
           GI:11993480 [Arabidopsis thaliana]
          Length = 695

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 306 SQFRCISYYLTLCNCAVNFVYEAICHSGQE 217
           S F+C ++ + L    ++F YE  CH G E
Sbjct: 189 SVFQCFTHTVPLIESLLSFRYEVPCHCGNE 218


>At2g02990.1 68415.m00251 ribonuclease 1 (RNS1) identical to
           ribonuclease SP:P42813 Ribonuclease 1 precursor (EC
           3.1.27.1) {Arabidopsis thaliana}, GI:561998 from
           [Arabidopsis thaliana]
          Length = 230

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -2

Query: 701 ITKQGNALSSKFKKGRNFIIELYYEDAVDVDEDKFQLGQSGWSVAEVSRDGPADSVLYRP 522
           + ++ N L +  K G N   + Y  +++  D  K  +G + W   E +RDG  +S LY+ 
Sbjct: 143 LKQKTNLLGALTKAGINPDGKSYSLESIR-DSIKESIGFTPW--VECNRDGSGNSQLYQV 199

Query: 521 WRAYDRRGQXI 489
           +   DR G  +
Sbjct: 200 YLCVDRSGSGL 210


>At1g66300.1 68414.m07529 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 456

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +1

Query: 154 LHCTSFSDG*RFDTFNRFGHRFLAAVTDGFINE----IDSAITKR*VIGNAPKLRWL 312
           L C+ F++   ++TF  F  RFL+  T+ ++N+     D  +      GNA   RW+
Sbjct: 73  LDCSDFTE---YNTFVSFVDRFLSTNTESYLNKFKLGFDCDLVGDEETGNAQMARWI 126


>At5g23190.1 68418.m02712 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 559

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = +3

Query: 477 GPLLYALASSIVCTPRPVQHTICGSIS-----GYFRD 572
           GP   +L S+I C PR V+H +    S      YFRD
Sbjct: 101 GPWFSSLNSTITCDPRNVEHLLKNRFSVFPKGSYFRD 137


>At5g02990.1 68418.m00243 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 548

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 413 WHRISQFHSHLTYRNSNDLRRRSPFVCXGLVYRMHATAGTAH-YLRVHLGILPRLTILIA 589
           WHR     S     N +D+     FVC     R+      +H + R+H   LPR++ ++ 
Sbjct: 303 WHRHQYPKSSTVVANGSDIYIVGGFVCGTSSKRVFVFDSRSHQWRRLHDMRLPRVSAVVN 362

Query: 590 LIE 598
           +++
Sbjct: 363 IVD 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,858,091
Number of Sequences: 28952
Number of extensions: 326141
Number of successful extensions: 705
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)