Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40309
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.5  
SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.4  
SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy...    27   4.4  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   5.9  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 538  TC*SSKEAWYP-SPSSST*EVFDSSVCVSFGLGHIS 434
            TC  S   W+  +PSS+  ++FD  +C  FG   IS
Sbjct: 1926 TCFPSSSRWFQYAPSSTACQMFDCFMCWFFGCTLIS 1961


>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 204 AFFDCFIKSCHVEKVLFIVALICVVP 281
           ++F+ F K+CH++ +L   AL  ++P
Sbjct: 21  SYFEAFEKNCHIQGILSKRALYMLIP 46


>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 136

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 729 HDMHWDMYATVQLKVTMSVFTGS 661
           H++HW +  T + ++T+S F G+
Sbjct: 26  HELHWALNETEKKRITLSEFRGT 48


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 593  LSAYRPVPEKQVVYHLQSVEQDSEPVNTDMVTFNCTVAYMSQCMSCD 733
            +S Y P     V    + + ++S  ++  +   N    Y+S C+SCD
Sbjct: 1114 ISIYPPARFGDVTEVTKVLNRESVKLDHYLTKTNLNTCYISMCLSCD 1160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,309,205
Number of Sequences: 5004
Number of extensions: 63885
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)