Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40309
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0381 - 3382316-3382459,3382872-3382907,3383323-3383429,338...    29   4.7  
02_04_0648 - 24716249-24717841                                         29   6.2  
03_05_0229 - 22142255-22142344,22142471-22142527,22142621-221427...    28   8.2  
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606...    28   8.2  

>08_01_0381 -
           3382316-3382459,3382872-3382907,3383323-3383429,
           3383518-3383587,3383839-3384663,3384748-3385044,
           3385175-3385501,3385760-3386046,3386728-3386896
          Length = 753

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +2

Query: 551 QQRWLSMTYPVDIDLSAYRPVPEKQVVYHLQSVEQDSEPVNTD 679
           Q+  +    P ++D S Y P P +    +++ +E  + P+N +
Sbjct: 164 QEEKIERPSPDEVDRSGYSPTPSRSTPDNMEPIEDGNTPLNRE 206


>02_04_0648 - 24716249-24717841
          Length = 530

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 364 FKSHLHDWVNMHFDTTLAHIASLHAYAIGTTQISA 260
           F SH      +H   TLAH+  LHA+A+ T + +A
Sbjct: 7   FSSHGDFVAALHRCATLAHLKQLHAHAVVTGRAAA 41


>03_05_0229 -
           22142255-22142344,22142471-22142527,22142621-22142705,
           22143552-22143677,22143750-22143793,22143877-22143999,
           22144078-22144216,22148795-22151292
          Length = 1053

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 439 ISTQLQHSLYKELRQLKQSLQHEQSFKSHLHDWVNMHFDTTLAHIASLHAYAIGTTQISA 260
           + TQ+ H   KEL+   Q++ HE+ F   L D  + + +       SL + A G+T I  
Sbjct: 168 LETQMDHKEEKELQSYLQNILHERRFLLVLDDVCDENTNGWEELRTSLASGASGSTVIVT 227

Query: 259 T 257
           T
Sbjct: 228 T 228


>02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,
            6069207-6069291,6069421-6069580,6069667-6069743,
            6069848-6069898,6069979-6070069,6070167-6070468,
            6070549-6070830,6070911-6071388,6071457-6071560,
            6071647-6071809,6071895-6072017,6072099-6072217,
            6072304-6072636,6072713-6073003,6073088-6073171,
            6073260-6073393,6073478-6073705,6073795-6073966,
            6074062-6074316,6074408-6074668
          Length = 1444

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 489  VEELGDGYQASLLL*QVIQMLNNAGSL*HIQWTSTYQPTDLYQRNKLFI 635
            V ++ DGY  +  + +V  +      +  I +   Y+ +DLYQRNK  I
Sbjct: 1100 VRKIKDGYNPATWMLEVTTLAQE--DILGINFAEVYRNSDLYQRNKTLI 1146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,877,411
Number of Sequences: 37544
Number of extensions: 433258
Number of successful extensions: 1123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)