Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40309
         (850 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_19918| Best HMM Match : TGF_beta (HMM E-Value=9.6)                  29   3.6  
SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)                     29   3.6  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      29   4.8  
SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 28   8.3  

>SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 614 PEKQVVYH--LQSVEQDSEPVNTDMVTFNCTVAYMSQCMSCDKCRASCRSMGPTAL 775
           PE + + H  L+ ++   E  N  M  +N  V +    + C+K R SC S  P  L
Sbjct: 164 PENRSLLHNLLELLKLVLENPNNKMTAYNLAVVFCPNVLYCNKQRGSCISSFPQEL 219


>SB_19918| Best HMM Match : TGF_beta (HMM E-Value=9.6)
          Length = 353

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +2

Query: 587 IDLSAYRPVPEKQVVYHLQSVEQDS-EPVNTDMVTFNCTVAYMS--QCMSCDKCRASCRS 757
           ++LSAY     +   Y  QSVEQ + E  + +   + C    +S  +C S +     C+S
Sbjct: 199 VELSAYECQSVELSAYECQSVEQSAYECQSVEQSAYECLSVELSSYECQSVELSAYECQS 258

Query: 758 MGPTALGGSMTGCCEC 805
           +  +A         EC
Sbjct: 259 VKLSAYESVKLSAYEC 274


>SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 934

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = -1

Query: 412 YKELRQLKQSLQHEQSFKSHLHDWVNM--HFDTTLAHIASLHAYAIGTTQISATINKTFS 239
           YK+L  L+  +Q  Q+F++ L+   +     D +   + S   YA  + QI   +++   
Sbjct: 566 YKDLTNLQGKIQKHQAFEAELNANQSRLDAVDNSGHQLISADHYA--SQQIQERLDELHE 623

Query: 238 TWQDLMKQSKNA*KINNDQ 182
            W++L K S N  K+ N Q
Sbjct: 624 MWRNLFKHSNN--KVQNLQ 640


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 680 MVTFNCTVAYMSQCMSCDKCRASCRSMGPTALGGSMTGCCEC 805
           +V ++C V + S  ++C  CR  C S    A       CC C
Sbjct: 134 VVCYSCRVVFCSCRVACCSCRVVCYSC-RVACCSCRVACCSC 174


>SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 998

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 246 VLFIVALICVVPIAYACNEAICASVVSKCMLT 341
           ++F++ L CVV IA      +  +++SKC+LT
Sbjct: 832 MVFVILLCCVVDIAMHGRADMGGALLSKCLLT 863


>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 509 VPGLFAALTSDPDAQQRWLSMTYPVDIDL-SAYRPVPEKQVVYHLQ 643
           V GL+  LT+  + +  W S+  P  + L S Y P  E    Y+L+
Sbjct: 595 VNGLYRVLTAPMETKVDWKSLVVPACLPLTSEYNPYKESLRSYYLE 640


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,490,243
Number of Sequences: 59808
Number of extensions: 512321
Number of successful extensions: 1508
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)