Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40309
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    29   4.2  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    29   4.2  
AF067936-4|AAC19210.1|  903|Caenorhabditis elegans Hypothetical ...    29   5.5  
U40421-5|AAA81441.1|  133|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U40029-15|ABD94114.1| 1824|Caenorhabditis elegans Hypothetical p...    28   7.3  
U40029-14|ABD94112.1| 2025|Caenorhabditis elegans Hypothetical p...    28   7.3  
U40029-13|ABD94113.1| 1884|Caenorhabditis elegans Hypothetical p...    28   7.3  
Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 588 MSTGYVIESQRC*ASGSLVRAAKRPGTH 505
           + T Y +E  RC  SG+LV A +  G H
Sbjct: 397 LDTEYSVEEGRCIGSGALVEAVRSDGLH 424


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 588 MSTGYVIESQRC*ASGSLVRAAKRPGTH 505
           + T Y +E  RC  SG+LV A +  G H
Sbjct: 395 LDTEYSVEEGRCIGSGALVEAVRSDGLH 422


>AF067936-4|AAC19210.1|  903|Caenorhabditis elegans Hypothetical
           protein C24G6.2a protein.
          Length = 903

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +2

Query: 581 VDIDLSAYRPVPEKQVVYHLQSVEQDSEPVNTDMVTFNCTVAYMSQCMSCDKCRASCRSM 760
           VD DLS   PVP+  V  H+++    S  + +DM+   C   Y  Q +   KC       
Sbjct: 233 VDPDLSQGIPVPDFDV--HVKN-STISTSIGSDMMDRKCRYVYYLQSVMSKKCNTMTEMP 289

Query: 761 GP 766
            P
Sbjct: 290 SP 291


>U40421-5|AAA81441.1|  133|Caenorhabditis elegans Hypothetical
           protein C02B8.3 protein.
          Length = 133

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 539 DPDAQQRWLSMTYPVDIDLSAYRPVPEKQVVYHLQSVEQDSEPVNTDMVTF 691
           D D   +  +M+ PV   L +Y P P+    +H+  V+ DS+   T +  F
Sbjct: 22  DSDDLSKGHTMSDPV-YQLCSYMPSPKDYNKFHVNGVQMDSDDYTTILTMF 71


>U40029-15|ABD94114.1| 1824|Caenorhabditis elegans Hypothetical
           protein F10G7.10c protein.
          Length = 1824

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +2

Query: 677 DMVTFNCTVAYMSQCMS-CDKCRASCRSMGP--TALGGSMTGCCECVRRQVL 823
           D V F C    ++ CMS C+ C  S    G   T       G C+C  + V+
Sbjct: 146 DAVAFRCNTCALTPCMSLCEDCFESNGHAGHDYTRFFSREGGACDCGNQDVI 197


>U40029-14|ABD94112.1| 2025|Caenorhabditis elegans Hypothetical
           protein F10G7.10a protein.
          Length = 2025

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +2

Query: 677 DMVTFNCTVAYMSQCMS-CDKCRASCRSMGP--TALGGSMTGCCECVRRQVL 823
           D V F C    ++ CMS C+ C  S    G   T       G C+C  + V+
Sbjct: 146 DAVAFRCNTCALTPCMSLCEDCFESNGHAGHDYTRFFSREGGACDCGNQDVI 197


>U40029-13|ABD94113.1| 1884|Caenorhabditis elegans Hypothetical
           protein F10G7.10b protein.
          Length = 1884

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +2

Query: 677 DMVTFNCTVAYMSQCMS-CDKCRASCRSMGP--TALGGSMTGCCECVRRQVL 823
           D V F C    ++ CMS C+ C  S    G   T       G C+C  + V+
Sbjct: 146 DAVAFRCNTCALTPCMSLCEDCFESNGHAGHDYTRFFSREGGACDCGNQDVI 197


>Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical
           protein T23F6.1 protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 719 CMSCDKCRASCRSMGPTALGGSMTGCCECVRRQVLV 826
           C S   C  +C    P        GC +CV++ VLV
Sbjct: 68  CGSMGMCGQTCCPSAPPPCSCGTPGCMQCVQQTVLV 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,764,917
Number of Sequences: 27780
Number of extensions: 382742
Number of successful extensions: 1183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)