Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40309
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   4.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -2

Query: 804 HSQHPVMEPPNAVGPMDRHEARHLSHDMHWDMYATVQ 694
           H+QHP M+P          +    +H+ H  MY   Q
Sbjct: 173 HTQHPHMQPQQGQHQSQAQQQHLQAHEQHM-MYQQQQ 208


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 824 QALVAGRIRSIPSWNHLMLLA 762
           +A+VAGR+  + +W  L+L A
Sbjct: 80  RAVVAGRLSEVSNWKVLLLEA 100


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 334 MHFDTTLAHIASLHAYAIGTTQISATINKTFSTWQDLM 221
           M F TTLA +  LH Y + +   +  I     T  D++
Sbjct: 153 MRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVLDVV 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,741
Number of Sequences: 438
Number of extensions: 4638
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)