Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40309
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ...    29   5.2  
At1g67830.1 68414.m07742 GDSL-motif lipase/hydrolase family prot...    28   6.8  

>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
           similar to GB:CAB75429 (GI:6996560) from [Nicotiana
           plumbaginifolia], contains Pfam profiles: PF00076 RNA
           recognition motif (3 copies)
          Length = 427

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -1

Query: 508 PSPSSST*EVFDSSVCVSFGLGHISTQLQHSLYKELRQLKQSLQHEQSFKSHLHDWVNMH 329
           P PS +    FD S C S  +G+I TQ+   L +E+      ++  +  +     +  +H
Sbjct: 43  PVPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVH 102

Query: 328 -FDTTLAHIASL 296
            FD   A +A L
Sbjct: 103 YFDRRSAALAIL 114


>At1g67830.1 68414.m07742 GDSL-motif lipase/hydrolase family protein
           similar to early nodulin ENOD8 [Medicago sativa]
           GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
           carota] GI:1911765, lanatoside 15'-O-acetylesterase
           [Digitalis lanata] GI:3688284; contains Pfam profile
           PF00657: Lipase/Acylhydrolase with GDSL-like motif
          Length = 372

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 478 FDSSVCVSFGLGHISTQLQHSLYKELRQLKQSL 380
           FDS  CVS  L H++ Q  H+L + + +L+ SL
Sbjct: 239 FDSHGCVS-PLNHLAQQFNHALKQAVIELRSSL 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,446,814
Number of Sequences: 28952
Number of extensions: 342221
Number of successful extensions: 890
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)