Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40308
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 31 0.21
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 30 0.28
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 29 0.48
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.64
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 29 0.64
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 1.9
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 27 1.9
SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.4
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 27 3.4
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 27 3.4
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 4.5
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 26 4.5
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.5
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 26 5.9
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 7.8
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 25 7.8
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 25 7.8
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 7.8
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb... 25 7.8
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 30.7 bits (66), Expect = 0.21
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 673 IVFGRIISSDHVLWSTVAVMHHFDFVRSPGFLVDSVSV 560
++ R+ S+HVL T ++ H +V PG LVDS ++
Sbjct: 756 LLIQRLEESNHVLTYTASIEHEGAYVIVPGHLVDSPNI 793
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 30.3 bits (65), Expect = 0.28
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +1
Query: 94 WDETTNQSKNEPQIDTFKKEPEIDTYQNESEIDTCKKETEID----TYKNEPEIDAPNMN 261
W + + + + + +T K + T SE ET D T KN E DA N+
Sbjct: 69 WFTSLDTLEPDDRKNTLKASEAVSTSAKTSEETAKPSETREDGEWNTLKNTLEADAQNLM 128
Query: 262 RK*CPLSRQWS*PKS*T 312
L R+WS PK+ T
Sbjct: 129 SGFQMLQRRWSQPKTTT 145
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 29.5 bits (63), Expect = 0.48
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 73 YDKHYRIWDETTNQSKNEPQIDTFKKEPEIDTYQNESEIDTCKKETEIDTYKNE 234
YD +++ T+ S E + D + PE YQNE I+ + ++KN+
Sbjct: 247 YDHLLKVYSGQTSFSLEEIEKDLGRSLPEYPAYQNEEGINALRNVLVAFSWKNQ 300
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 29.1 bits (62), Expect = 0.64
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 107 PTSLKTNHKSIHSKKNQKSIHTKMNQKSIHA 199
P K +H S S ++ KS+ T NQK IH+
Sbjct: 856 PMKKKLSHSSASSTRSIKSLLTNANQKHIHS 886
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 29.1 bits (62), Expect = 0.64
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Frame = +1
Query: 103 TTNQSKNEPQIDTFKKEPEIDTYQ-----NESEIDTC----KKETEIDTYKNEPEIDA 249
TTN+ ++ P +D+ + P T NE+E+D KKE E + +NE E DA
Sbjct: 53 TTNEKQSSP-VDSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEEEADA 109
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = +1
Query: 97 DETTNQSK--NEPQIDTF----KKEPEIDTYQNESEIDTCKKETEIDTYKNEPEID 246
D T N+ + NE ++D KKE E + +NE E D ++E E + E E D
Sbjct: 71 DTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDDEEDEED 126
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 97 DETTNQSKNEPQIDTFKK-EPEIDTYQNESEIDTCKKETEIDTYKNEPE 240
D + + E QID + + N+ E+DT E E T+K+E +
Sbjct: 96 DASLGKKSTEHQIDGIRNGSSNLQMEGNDKELDTDNNEDESTTFKDEED 144
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 64 EKIYDKHYRIWDETTNQSKNEPQIDTFKKEPEIDTYQNESEIDTCKK---ETEID 219
E +Y Y +W + ++QSK + + +++ E D +S+ +T K ET +D
Sbjct: 1094 ENVYINSYNLWVDQSSQSKKQNRTTNWRRWLESDEGWRKSKANTDIKFFSETTLD 1148
>SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/59 (23%), Positives = 33/59 (55%)
Frame = +2
Query: 113 SLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQKSMRPT*TGNSVRYRDS 289
++ TN K + + KNQ ++H K+N+ ++ K +S + ++ + P SV+ +++
Sbjct: 9 NVPTNQK-LDTCKNQSTVHQKVNKSLGNSNKVLRSNAVQSDKANREPRRITKSVKKKEN 66
>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 88 RIW-DETTNQSKNEPQIDTFKKEPEIDTYQNESEIDTCKKETEIDTYKNEPEI 243
+ W D N++K I +DTY N+ E D KK I T N+ ++
Sbjct: 12 KYWKDVVQNKNKFLKNIGIISGPKLVDTYSNQFEADFLKKCVLIPTSYNKEDL 64
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/65 (20%), Positives = 33/65 (50%)
Frame = +2
Query: 32 QTRTKRRWTFGRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQ 211
++R ++ ++ +++ + +K P + K + +K++K K+N+ S+H K
Sbjct: 933 RSRGDKKVVDNKRDASDSEDLAIKNPMNKKAKVGKVDFRKHEK----KLNKASMHRDKFS 988
Query: 212 KSIHT 226
+HT
Sbjct: 989 TGMHT 993
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 22 TLISNPDQEKMDFWEKIYDKHYRIWDETTNQSKNEPQIDTFKKEPE-IDTYQNESEIDTC 198
T+ S+P + +W Y+K I T + K ++ +PE + + S++ +
Sbjct: 146 TINSSPFKSLSQYWNAAYNKKESISSSTNSNIKLHLAARKYQTKPEKFNENSSISQVTSA 205
Query: 199 KKETEIDTYKNEPE 240
K T+ ++ +P+
Sbjct: 206 IKATKAFSHLTQPK 219
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 4.5
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -2
Query: 567 LVFMWSLTGLCSFDSSWAGS*IPVS 493
++F W +T +F ++W G +P+S
Sbjct: 347 ILFFWIVTPALNFTNTWYGDYLPIS 371
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 4.5
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Frame = +1
Query: 4 NLNSELTLISNPDQEKMDFW--EKIYDKHYRIWDETTN----QSKN-EPQIDTFKKEPEI 162
N + + LIS P +F EK D R + N SKN E + K +
Sbjct: 62 NPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSPSKNHETSLSPSKSTIDN 121
Query: 163 DTYQNESEIDTCKKETEIDTYKNEPEIDAPNMNRK*CP 276
+ + ++EID K + + YK + + P+ CP
Sbjct: 122 NERKLDNEIDNYKHDVKYSPYKGQGKTSNPSQGTTKCP 159
>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
Lac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = -1
Query: 577 VDSVSVYVVIDRFVFIRL*LGRFLNSSIISLTLGACSGVSVFSVTIKVWEPSLF-SRSVV 401
V++V VY + FVF+ + + +LN I+ G ++ F + + + SR V
Sbjct: 271 VNTVIVYPIFVIFVFVWIYMRHYLNFKIMWAVWGTMRTINSFDLDWAAEQYKCWISRDVT 330
Query: 400 VVICVSTSALSIW 362
+++ + ++I+
Sbjct: 331 LILLTALQLVNIY 343
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 229 FCMYRFLFLFCMYRFLIHFGM 167
FC+ F FLF ++ F +HF +
Sbjct: 288 FCLIFFPFLFFLFWFYMHFNI 308
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/58 (20%), Positives = 30/58 (51%)
Frame = +1
Query: 76 DKHYRIWDETTNQSKNEPQIDTFKKEPEIDTYQNESEIDTCKKETEIDTYKNEPEIDA 249
D+H+R + + + + Q + K+E +Y+N+ + ++ T D Y++ + D+
Sbjct: 174 DRHHRSNQDRSRERSDNEQHSSDKREHSRRSYRNDR--NNWRERTHNDRYRHRDKYDS 229
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 554 HINTNGVDKKARTSNEIKMVHNSNGAPKDVIRANDPPEDDLPKNIGVN 697
H+ NGVDK + S+E +G P I A PE L + +N
Sbjct: 899 HLPANGVDKIKQPSSERSKWWFDDGLPAKSIAAPPGPEYRLNPSRPIN 946
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 76 DKHYRIWDETTNQSKN 123
DK RIWD T+N+ K+
Sbjct: 242 DKTIRIWDSTSNKKKS 257
>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 64 EKIYDKHYRIWDETTNQS-KNEPQIDTFKKEPEIDTYQNESEIDTCKKETEID 219
+++Y+ Y DET+ + E ++ FKK+ ++T + EI K + +++
Sbjct: 30 KRVYED-YDFKDETSAKPIPTEKKLKVFKKDDNVETLLSALEIQNEKSKQQVE 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,547
Number of Sequences: 5004
Number of extensions: 61294
Number of successful extensions: 290
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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