Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40308
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0267 - 23704249-23704401,23704476-23704780,23704967-237056... 31 0.87
06_01_0046 + 425064-425296,426278-426327,426607-426696,426778-42... 31 1.2
08_02_1242 - 25513665-25513997,25514184-25514257,25514317-255144... 30 1.5
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 30 1.5
03_06_0340 + 33252677-33252864,33253086-33254442,33254565-332546... 30 1.5
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 30 2.0
03_02_0887 - 12188178-12188224,12188464-12188692 30 2.0
03_03_0190 + 15293589-15293606,15293790-15293863,15294009-152941... 29 2.7
08_02_0746 + 20721421-20721649,20722912-20722971,20723318-207233... 29 3.5
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 29 3.5
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 29 3.5
02_04_0492 - 23424745-23425890 29 3.5
01_06_0535 + 30061862-30063388 29 3.5
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277... 29 4.7
07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056 29 4.7
04_04_1247 - 32043776-32043880,32044296-32044505,32044595-320451... 29 4.7
08_01_0540 + 4691929-4692014,4692915-4693125,4693756-4693885,469... 28 8.1
03_03_0153 - 14910420-14910769,14910946-14911008,14911084-149113... 28 8.1
>05_05_0267 -
23704249-23704401,23704476-23704780,23704967-23705674,
23707772-23708114,23708300-23708374,23708625-23708675,
23708747-23708818,23708903-23709042,23709227-23709280,
23709446-23709553,23709769-23709864,23709946-23710005,
23710352-23710411,23711699-23711927
Length = 817
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +2
Query: 62 GRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQK 241
G KS + + +S + KS + + + IHTK Q + KKKQ+ K N+K
Sbjct: 13 GSKSQMEGESTMSESKSSSRGKKKSKTTSEQKVEIHTKETQNLANTKKKQEEGKIKRNKK 72
Query: 242 S 244
+
Sbjct: 73 A 73
>06_01_0046 +
425064-425296,426278-426327,426607-426696,426778-426840,
427524-427583,428135-428194,428654-428713,429273-429347,
429559-429602
Length = 244
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 62 GRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQK-SIHTKMNQKSIHAKKKQKSIHTKMNQ 238
G KS ES M S K + QK IHTK Q +A++KQ+ K N+
Sbjct: 13 GSKSQMEEGESIMSESKSSSRGKKKSKTTSEQKVEIHTKETQHLENAEEKQEEGKIKRNK 72
Query: 239 KS 244
K+
Sbjct: 73 KA 74
>08_02_1242 -
25513665-25513997,25514184-25514257,25514317-25514422,
25514507-25514557,25514629-25514700,25514785-25514924,
25515109-25515162,25515328-25515435,25515652-25515747,
25515828-25515887,25516234-25516293,25517581-25517809
Length = 460
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +2
Query: 62 GRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQK 241
G KS + + +S + KS + + + IHTK Q + KKKQ+ K N+K
Sbjct: 13 GSKSQMEGESTMSESKSSSRGKKKSKTTSEQKVEIHTKETQNLENTKKKQEEGKIKRNKK 72
Query: 242 S 244
+
Sbjct: 73 A 73
>05_01_0084 +
562119-562411,562854-562902,563151-563162,563194-563327,
563716-566278
Length = 1016
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = +2
Query: 56 TFGRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMN 235
++G S NTT + M +PTS + N + ++ + ++T MN ++ + S++ N
Sbjct: 266 SYGAISAQNTTNANMMQPTS-QLNIMNANTMQPTSQLNT-MNANTMQPTSQLSSLNPNQN 323
Query: 236 QKSMRP 253
Q+ P
Sbjct: 324 QRFAAP 329
>03_06_0340 +
33252677-33252864,33253086-33254442,33254565-33254667,
33256081-33256171,33257208-33257300,33258316-33258471,
33258583-33258655
Length = 686
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 389 ANHNYHTP*KQRWLPNFDSHREN*DPRTSTERQRNDTGIQEPAQLESNEHKPVNDHINT 565
ANH Y T Q W+ F ++R + + R++ G QL SN P N ++ T
Sbjct: 467 ANHAYFTDDSQNWITEFKNNRRDIGVFNLEDNSRDELG---SPQLWSNWPSPSNANLRT 522
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +1
Query: 16 ELTLISNPDQEKMDFWEKIYDKHYRIWDETTNQSKNEPQIDTFKKEPEIDTYQNESEIDT 195
E T + PD++ + + D D+ T + N+P D +EP+ T N+ D
Sbjct: 1124 EDTTVEAPDEKTKTANDPVEDATVEEPDKKT--AANDPVEDATVEEPDKKTAANDPVEDA 1181
Query: 196 CKKETEIDTYKNEPEIDA 249
+E + T N+P DA
Sbjct: 1182 TVEEPDKKTAANDPAEDA 1199
>03_02_0887 - 12188178-12188224,12188464-12188692
Length = 91
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 89 ESGMKRPTSLKTNHKSIHSKKNQK-SIHTKMNQKSIHAKKKQKSIHTKMNQKS 244
ES M S K + QK IHTK Q + KKKQ+ K N+K+
Sbjct: 21 ESTMSESKSSSIGKKKSKTTSEQKVEIHTKETQNLENTKKKQEEGKIKRNKKA 73
>03_03_0190 +
15293589-15293606,15293790-15293863,15294009-15294138,
15294834-15295088,15295184-15295453
Length = 248
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 101 KRPTSLKTNHKSIH-SKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQKSMRPT*TGNSVR 277
K+PTS+ K S Q +KM ++ +AK K+ S H + + +RP N+
Sbjct: 92 KKPTSVAEVAKQRELSGTLQSEADSKMKKQISNAKSKELSGHGLFDPQDVRPNGARNTAN 151
Query: 278 YRDSGHNP 301
+ H P
Sbjct: 152 GTGASHTP 159
>08_02_0746 +
20721421-20721649,20722912-20722971,20723318-20723377,
20723458-20723553,20723764-20723871,20724037-20724090,
20724275-20724414,20724499-20724570,20724642-20724692,
20724943-20725017,20725205-20725585,20726372-20727604,
20727679-20727831
Length = 903
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +2
Query: 62 GRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQK 241
G KS + + +S + KS + + + IHTK Q + KKKQ+ K N+K
Sbjct: 13 GSKSQMEGESTMSESKSSSRGKKKSKTTFEQKVEIHTKETQNLENTKKKQEEGKIKRNKK 72
Query: 242 S 244
+
Sbjct: 73 A 73
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 71 STTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQKS 244
S+ +T+ S R K++ K H KS H K +KS K+K K + + S
Sbjct: 206 SSLDTSSSSDHRHKRRKSSKKDKHRSAKGKSKHKKTKRKSRGTKRKSKRSYRSSSDDS 263
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +1
Query: 124 EPQIDTFKKEPEIDTYQNESEIDTCKKETEIDTYKNEPE 240
+PQ T+ +P+ +TYQ + + +T + ++ Y +P+
Sbjct: 235 QPQGQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQ 273
>02_04_0492 - 23424745-23425890
Length = 381
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 142 MYRFVVRF*TGWSFHPRFCSVCRRF 68
M V+ + GWS HP F S CR +
Sbjct: 22 MLVLVLEYRLGWSTHPSFASTCRHW 46
>01_06_0535 + 30061862-30063388
Length = 508
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 254 LGASISGSFLYVSISVSFLHVSISDSFWY 168
+ A ++GSF+ ++I S L+ ++S FWY
Sbjct: 353 IAAVLNGSFMGLNIVASILNSNLSAQFWY 381
>09_06_0199 +
21526872-21527250,21527431-21527594,21527673-21527736,
21528001-21528134,21528302-21528385,21528526-21528600,
21528683-21528754,21528852-21528925,21529185-21529282,
21529355-21529464,21529794-21529862,21529944-21530018,
21530519-21530611,21530690-21530769,21530877-21530976,
21531150-21531586,21531676-21531706,21532873-21533822,
21533982-21534201
Length = 1102
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 572 VDKKARTSNEIKMVHNSNGAPKDVIRANDPPEDDL 676
V K + SN I + S+ P++ I DP DDL
Sbjct: 555 VAKLKKLSNTIPVTSESSKVPEEAIEKTDPSSDDL 589
>07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056
Length = 1109
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 138 IDLWFVFRLVGRFIPDSVVFVV 73
I LWFVF L+ FI +VVF++
Sbjct: 714 IALWFVFSLIIAFIAGTVVFIM 735
>04_04_1247 -
32043776-32043880,32044296-32044505,32044595-32045101,
32045362-32045583,32046054-32046184,32046737-32047745,
32047830-32047904,32047995-32048066,32048153-32048328,
32048494-32048646,32048739-32049234
Length = 1051
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 588 GLRTKSKWCITATVLQRT*SEL 653
GLR K +WC++ T +Q T +L
Sbjct: 589 GLRAKRRWCLSGTPIQNTIDDL 610
>08_01_0540 +
4691929-4692014,4692915-4693125,4693756-4693885,
4695422-4696072,4696179-4696395,4697040-4697111,
4697167-4697257,4697367-4698363,4698914-4699044,
4699584-4699802,4700110-4700805,4700912-4701121,
4701606-4701710
Length = 1271
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 588 GLRTKSKWCITATVLQRT*SEL 653
GLR K +WC++ T +Q EL
Sbjct: 747 GLRAKRRWCLSGTPIQNAIDEL 768
>03_03_0153 -
14910420-14910769,14910946-14911008,14911084-14911339,
14911432-14911522,14911798-14912096,14912177-14912295,
14922536-14922594,14922676-14922965,14923052-14923567,
14923634-14923936
Length = 781
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Frame = +1
Query: 115 SKNEPQIDTFKKEPEIDTYQNESEIDTCKKET-----EIDTYKNEPEIDAPNMNRK*CPL 279
S+ ID K+P+ + I + E E Y+ PE+D P M C
Sbjct: 369 SRKPSDIDPTGKDPDPTVTEPTERIAIGRPEVDQHAYEESLYEERPEVDYPTMGTLWCRR 428
Query: 280 SRQWS 294
R+W+
Sbjct: 429 QRRWA 433
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,690,865
Number of Sequences: 37544
Number of extensions: 357579
Number of successful extensions: 1262
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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