Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40308
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32270.1 68417.m04591 UDP-sugar transporter-related contains ... 33 0.14
At4g26630.1 68417.m03837 expressed protein 31 0.55
At1g29470.1 68414.m03605 dehydration-responsive protein-related ... 31 0.55
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 31 0.96
At5g42710.1 68418.m05202 hypothetical protein 30 1.7
At3g21690.1 68416.m02734 MATE efflux family protein similar to r... 30 1.7
At3g43150.1 68416.m04546 hypothetical protein 29 2.2
At1g44780.1 68414.m05130 expressed protein ; expression supporte... 29 2.2
At5g41780.1 68418.m05087 myosin heavy chain-related weak similar... 29 2.9
At5g65380.1 68418.m08223 ripening-responsive protein, putative s... 29 3.9
At4g10940.1 68417.m01779 PHD finger family protein contains Pfam... 29 3.9
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 29 3.9
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 29 3.9
At2g35140.1 68415.m04310 expressed protein ; expression supporte... 29 3.9
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 29 3.9
At1g18670.1 68414.m02330 protein kinase family protein contains ... 28 5.1
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-... 28 6.8
At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor... 28 6.8
At5g24940.1 68418.m02953 protein phosphatase 2C, putative / PP2C... 28 6.8
At2g02790.1 68415.m00222 calmodulin-binding family protein very ... 28 6.8
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi... 28 6.8
At5g64030.1 68418.m08039 dehydration-responsive protein-related ... 27 9.0
At5g57120.1 68418.m07132 expressed protein weak similarity to SP... 27 9.0
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 27 9.0
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 27 9.0
At2g13950.1 68415.m01550 DC1 domain-containing protein contains ... 27 9.0
>At4g32270.1 68417.m04591 UDP-sugar transporter-related contains
weak similarity to Swiss-Prot:Q95YI5 UDP-sugar
transporter UST74c [Drosophila melanogaster]
Length = 364
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/93 (25%), Positives = 43/93 (46%)
Frame = -1
Query: 667 FGRIISSDHVLWSTVAVMHHFDFVRSPGFLVDSVSVYVVIDRFVFIRL*LGRFLNSSIIS 488
F II S+HV WS V F + F +DS S +V + + +F L L + ++
Sbjct: 56 FTCIIDSNHVFWSRVQFWKIISFTAADSFSIDSASTFVPV-KTLFHTLPLA---IAYLLY 111
Query: 487 LTLGACSGVSVFSVTIKVWEPSLFSRSVVVVIC 389
+ + CS V F + ++ + + ++ IC
Sbjct: 112 MVVLLCSCVLAFVLNYCIFLNTTLNSALTQTIC 144
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/71 (21%), Positives = 34/71 (47%)
Frame = +1
Query: 28 ISNPDQEKMDFWEKIYDKHYRIWDETTNQSKNEPQIDTFKKEPEIDTYQNESEIDTCKKE 207
++ PD ++D K D+ D+ + KNE +T K E +++ ++E + + +
Sbjct: 46 MAEPDNMEIDAQIKKDDEKAETEDKESEVKKNEDNAETQKMEEKVEVTKDEGQAEATNMD 105
Query: 208 TEIDTYKNEPE 240
+ D K + +
Sbjct: 106 EDADGKKEQTD 116
Score = 31.1 bits (67), Expect = 0.73
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +1
Query: 118 KNEPQIDTFKKEPEIDTYQNESEIDTCKKETEIDTYKNEPEIDAPNMN 261
K++ + +T KE E+ +NE +T K E +++ K+E + +A NM+
Sbjct: 60 KDDEKAETEDKESEVK--KNEDNAETQKMEEKVEVTKDEGQAEATNMD 105
>At1g29470.1 68414.m03605 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 770
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 434 NFDSHREN*DPRTSTERQRNDTGIQEPAQLESNEHKPVNDHINTNGVDKKARTSNE 601
N D R+N D TE + ++T +E QLE + + N ++NG ++ A S E
Sbjct: 124 NGDGDRKNGDGEKDTESESDETKQKEKTQLEESSEE--NKSEDSNGTEENAGESEE 177
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
TIGR01612: reticulocyte binding protein; contains
TIGRFAM TIGR00864: polycystin cation channel protein;
similar to fimbriae-associated protein Fap1
[Streptococcus parasanguinis] (GI:3929312)
Length = 1498
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 503 IQEPAQLESNEHKPVNDHINTNGVDKKARTSNEIKMVHNSNGAPKDVIRAN-DPPEDDL 676
+++ + ++ P N H+ + G++ K + E++ +H+S KD+ + N + PE ++
Sbjct: 140 VEDSLEKSVDQQHPGNGHLES-GLEGKVESKEEVEQLHDSEVGSKDLTKNNVEEPEVEI 197
>At5g42710.1 68418.m05202 hypothetical protein
Length = 807
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 29 SQTRTKRRWTFGRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKS--IHAK 202
S++R + + ++ + T T + PT + HK + ++ QK +H N+K +
Sbjct: 372 SKSRKRSKASYKKDGETTTKNVIKRNPTPTENKHKVV-ARSQQKPLHKLSNKKEKLQRER 430
Query: 203 KKQKSIHTKMNQKSM 247
++ + T +QK +
Sbjct: 431 HRENGVTTNHSQKPL 445
>At3g21690.1 68416.m02734 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
MatE uncharacterized membrane protein family
Length = 506
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/83 (24%), Positives = 40/83 (48%)
Frame = -3
Query: 263 RFMLGASISGSFLYVSISVSFLHVSISDSFWYVSISGSFLNVSICGSFLDWLVVSSQIL* 84
+F+ SI Y+S + F+H+ +S Y + L S+ S W++V +Q +
Sbjct: 194 KFLQSQSIVAPSAYISTATLFVHLLLSWLAVY-KLGMGLLGASLVLSLSWWIIVVAQFVY 252
Query: 83 CLS*IFSQKSIFSWSGFEIKVNS 15
++ S++ +W GF ++ S
Sbjct: 253 IVT---SERCRETWRGFSVQAFS 272
>At3g43150.1 68416.m04546 hypothetical protein
Length = 194
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 31 SNPDQEKMDFWEKIYDKHYRIWDE 102
S +E DF +K+ DKH R++DE
Sbjct: 53 SKDKKEAYDFMDKVVDKHRRLYDE 76
>At1g44780.1 68414.m05130 expressed protein ; expression supported
by MPSS
Length = 471
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +2
Query: 476 TERQRNDTGIQEPAQLESNEHKPVNDHINTNGVDKKARTSNEIKMVHNSNGAPKDVIRA 652
TER+ ++ +E A+ +S EH+P+ND N ++A+ ++K N +D+ RA
Sbjct: 95 TEREDDEIPTKEVAE-QSEEHEPMNDAGEENTSKREAK---DVKGKGNKETLQRDIKRA 149
>At5g41780.1 68418.m05087 myosin heavy chain-related weak similarity
to M protein, serotype 5 precursor (SP:P02977)
{Streptococcus pyogenes} and to Myosin heavy chain,
non-muscle (SP:Q99323) (Zipper protein) (Myosin II)
{Drosophila melanogaster}
Length = 537
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +2
Query: 47 RRWTFGRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHT 226
+RW+FG K TN E M+ H + + IH + IH + K I T
Sbjct: 307 KRWSFGSKLNTNLLEKKMEELAEDFRMKMEDHIRILHRRIHV---AEQIHLESKSSYIKT 363
Query: 227 KMNQKS 244
+ N ++
Sbjct: 364 RDNTQT 369
>At5g65380.1 68418.m08223 ripening-responsive protein, putative
similar to ripening regulated protein DDTFR18
[Lycopersicon esculentum] GI:12231296; contains Pfam
profile PF01554: Uncharacterized membrane protein family
Length = 486
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/93 (22%), Positives = 46/93 (49%)
Frame = -3
Query: 425 IVVFKECGSCDLRFNFGSVDLVRVTHDFCPLFGNAGLFVHDLGYDHCLDNGHYFRFMLGA 246
++V+ CG C L + S + + +F L ++G+ + CL+N Y+R ++
Sbjct: 234 LLVYSTCGGCPLTWTGLSSEALTGLWEFLKLSASSGVML-------CLEN-WYYRILI-- 283
Query: 245 SISGSFLYVSISVSFLHVSISDSFWYVSISGSF 147
++G+ I+V L + ++ + W + I +F
Sbjct: 284 IMTGNLQNARIAVDSLSICMAINGWEMMIPLAF 316
>At4g10940.1 68417.m01779 PHD finger family protein contains Pfam
profile: PF00097 zinc finger, C3HC4 type
Length = 192
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 174 LVCIDFWFFFECIDLW 127
L C WF FECID W
Sbjct: 44 LDCCQHWFCFECIDNW 59
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 116 LKTNHKSIHSKKNQKSIHTK---MNQKSIHAKKKQKSIHTKMNQKS 244
++TN K + +K +K H+K QKSI K+ + K Q S
Sbjct: 322 IETNRKDVDKRKKEKGKHSKEIEQMQKSIKELNKKMELFNKKRQDS 367
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 112 QSKNEPQIDTFKKEPEIDTYQNESEIDTCKKETEIDT 222
+S+NE ++D + E E T ++EID +E E +T
Sbjct: 238 ESENEAEVDRTETESEDGTDSTDNEIDDSDEEGESET 274
>At2g35140.1 68415.m04310 expressed protein ; expression supported
by MPSS
Length = 879
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 479 ERQRNDTGIQEPAQLESNEHKPVNDHINTNGVDKKARTSNEIKMVHNSNGAPKDVIR-AN 655
+R RND I+ +S PV+D + N D + + N ++ + S A + +R
Sbjct: 780 DRGRNDNPIETVLASQSATEVPVHDFLGRNECDSQ-KDDNPVENLLASQSATEVHVRDFF 838
Query: 656 DPPEDDLPKNIGVN 697
EDD KN G N
Sbjct: 839 GRNEDDSEKNKGNN 852
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 588 GLRTKSKWCITATVLQRT*SEL 653
GLR K +WC++ T +Q T +L
Sbjct: 495 GLRAKRRWCLSGTPIQNTIDDL 516
>At1g18670.1 68414.m02330 protein kinase family protein contains
Protein kinases ATP-binding region signature,
PROSITE:PS00107 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 662
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 47 RRWTFGRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQK-SIH 223
RR T RK T P +H K+N S+H ++ S +K QK S H
Sbjct: 457 RRGTESRKPTRKPPAFAKLAPAEDVRHHSQKFQKRNGHSVHNSIDSDSTLFEKMQKPSNH 516
Query: 224 TK 229
K
Sbjct: 517 EK 518
>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 916
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 464 PRTSTERQRNDTGIQEPAQLESNEHKPVNDHINTNGVDKKARTSN 598
P +S R++ D+G+ QL ++E KP+ ++ NG K N
Sbjct: 175 PISSMFRKKIDSGMSGGNQLSNDEKKPLVQKLHQNGSTVKNEVPN 219
>At5g42390.1 68418.m05161 metalloendopeptidase identical to
chloroplast processing enzyme metalloendopeptidase
[Arabidopsis thaliana] gi|2827039|gb|AAC39482
Length = 1265
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 381 VETQITTTTLLENNDGSQTLIVTEKTETPEQAPSVKEMILEF 506
+E+ + T+++ G +TL+ T T E+ +V +LEF
Sbjct: 622 MESDALSHTVMDQTQGHETLVAVAGTVTLEEVNTVGAKVLEF 663
>At5g24940.1 68418.m02953 protein phosphatase 2C, putative / PP2C,
putative protein phosphatase type 2C - Lotus japonicus,
EMBL:AF092432
Length = 447
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 125 NHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQKSMRPT*TGNSVRYRDSG 292
+H +++ ++ + +NQK I A+ S NQK + T TG+SV SG
Sbjct: 319 DHTTVNKDLDRNTDSQSLNQKPIAARSADNS-----NQKPIATTATGHSVSSEQSG 369
>At2g02790.1 68415.m00222 calmodulin-binding family protein very low
similarity to SP|P12036 Neurofilament triplet H protein
{Homo sapiens}; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 636
Score = 27.9 bits (59), Expect = 6.8
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Frame = +2
Query: 32 QTRTKRRWTFGRKSTTNTTESGMKRPTSLKTNHKSIHSKK---NQKSIHTKMNQKSIHAK 202
+++TK+R ++ + G+++PT + T S S+ N+K T + + S K
Sbjct: 260 KSQTKKRSFQAVEAEKGKLKRGVRKPTGVSTTANSSTSRSTADNEKPKRT-VRKASTLGK 318
Query: 203 KKQKSIHTKMNQKSMRPT*T---GNSVRYRDSGHNPSH 307
+ K + K Q S + T G+SV +D SH
Sbjct: 319 ELSKIENDKSKQSSRKSTSAIKEGSSVEVKDEKPRISH 356
>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 7 LNSELTLISNPDQEKMDFWEKIYDKHYRIWDETTNQ-SKNEPQIDTFKKEPEIDTYQNES 183
+NS L L S ++ D ++ D+H R +ET N+ + E ++D+ K++ +++ + +
Sbjct: 365 MNSSLQLASLEQKKTDDRVLRLVDEHKRKKEETLNKILQLEKELDS-KQKLQMEIQELKG 423
Query: 184 EIDTCKKETEID 219
++ K E E D
Sbjct: 424 KLKVMKHEDEDD 435
>At5g64030.1 68418.m08039 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 829
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +2
Query: 434 NFDSHREN*DPRTSTERQRNDTGIQEPAQLESNEHKPVNDHINTNGVDKKARTSNE 601
N D++ + P T D Q+ + ++ E K ++D ++ DK+ +T NE
Sbjct: 165 NPDTNEKQTKPETEDNELGEDGENQKQFESDNGEKKSIDDDKKSSDDDKENKTGNE 220
>At5g57120.1 68418.m07132 expressed protein weak similarity to
SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
Length = 330
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 46 EKMDFWEKIYDKHYRIWDETTNQSKNEPQIDTFKKEPEIDTYQNESEI-DTCKKETEIDT 222
E D EK+ K R E T + + ++ +++ E + +N+ + +T KETE
Sbjct: 165 EADDDKEKVSKKRKRSEPEETKEETEDDDEESKRRKKEENVVENDEGVQETPVKETETKE 224
Query: 223 YKNEPEIDAPNMNRK 267
N + + + N+K
Sbjct: 225 NGNAEKSETKSTNQK 239
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 575 DKKARTSNEIKMV--HNSNGAPKDVIRANDPPEDDLPKNI 688
++ R+SNE+ + H SN +PK + AN+ PK I
Sbjct: 2003 NQDGRSSNEVASLANHASNSSPKAAVTANENSAFQNPKEI 2042
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 591 LRTKSKWCITATVLQRT*SEL 653
L TK +WCIT T +QR +L
Sbjct: 609 LYTKHRWCITGTPIQRKLDDL 629
>At2g13950.1 68415.m01550 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 517
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -3
Query: 317 LFVHDLGYDHCLDNGHYFRFMLGASISGSFLYVS--ISVSFLHVSISDSFWY 168
L V +GYDH G+YF S F+Y S S+ SIS+ F Y
Sbjct: 328 LKVVSIGYDHYRRRGNYFDCGACKRASCGFVYDSQDFSLDLRCASISEPFQY 379
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,812,990
Number of Sequences: 28952
Number of extensions: 314528
Number of successful extensions: 1222
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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