Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40307
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    75   8e-15
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.2  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   3.8  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   6.6  
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    25   8.8  

>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 74.9 bits (176), Expect = 8e-15
 Identities = 41/102 (40%), Positives = 64/102 (62%)
 Frame = +1

Query: 259 PPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHA 438
           PPT+ ++++F +  +P G++ D+  AE    RT     T EEKRALDR + D Y ++R A
Sbjct: 68  PPTVGLSKIFVNKKYPVGEVCDY--AEDNLWRT-----TDEEKRALDRQNFDQYNDLRRA 120

Query: 439 AEAHRQTRKHIRNWIKPGMTMIDIVKS*RRLRDVLLVKMGSK 564
           AE HRQ R++ ++ IKPGM+M+D+V +       L+ + G K
Sbjct: 121 AEVHRQARQYAQSVIKPGMSMMDVVNTIENTTRALVEEDGLK 162



 Score = 55.2 bits (127), Expect = 7e-09
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = +3

Query: 519 LEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHY 617
           +E T R L+ EDGLK+G+ FPTG S NHCAAHY
Sbjct: 148 IENTTRALVEEDGLKSGIGFPTGVSLNHCAAHY 180


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 495 HARLDPIADVFSCLPVGFSSMS 430
           H  LD I DVFSC PV   + S
Sbjct: 194 HILLDFILDVFSCSPVNLKAQS 215


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 257 SHLLYQ*RNYFLMETFLRVKLWTMVLL--RVLMRELQKIVLQVRRKELLIDYIKIFIRKS 430
           SHL     +YFL++ F+RV     ++L  +   ++    VL    K L + Y++   +  
Sbjct: 286 SHLHDNLNSYFLLKFFVRVLFGVCMILIWKSFAKQALLAVLPPIFKSLRLSYLEPKSQSE 345

Query: 431 DMLLKPTGRQENTSAIGSSL 490
             +   TG   +   IG+ L
Sbjct: 346 KGIRAATGSNHSPGNIGTEL 365


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 475 CGCVFLSACGLQQHV*FPDKYLYVIYQELFSPHL*NDFLQFSHQYPQ 335
           C CV + +   QQ +  P  ++Y +     +  +  +FL F H YPQ
Sbjct: 351 CYCVEVHS---QQTILVPSGWIYAVVTPCDTISIAGNFLTFLHIYPQ 394


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 513 EELEKTARRLIGEDGLKAGLAFPTGCSRNHCAAH 614
           E L +  +++        G+AFPT  S N  AAH
Sbjct: 58  ELLNEAIKKVYRTKDAYKGIAFPTAVSPNDMAAH 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,429
Number of Sequences: 5004
Number of extensions: 34230
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)