Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40307
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 92 4e-19
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 89 3e-18
01_06_1193 - 35306608-35306777,35306869-35306890,35306988-353069... 31 0.97
05_01_0207 + 1493224-1493385,1493475-1493839,1494313-1494390,149... 30 1.7
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 29 2.2
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892... 29 3.9
03_01_0040 - 353861-353981,354618-354730,355034-355129,355406-35... 29 3.9
12_02_0604 + 20920609-20922144 28 5.2
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406... 28 5.2
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 91.9 bits (218), Expect = 4e-19
Identities = 45/87 (51%), Positives = 60/87 (68%)
Frame = +1
Query: 259 PPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHA 438
PP+IP+ ELFP G+FPEG+I + D+ R TSEEKR L+RL K +Y +R A
Sbjct: 194 PPSIPIDELFPSGDFPEGEIQQYK-----DDNLW--RTTSEEKRELERLQKPMYNAVRRA 246
Query: 439 AEAHRQTRKHIRNWIKPGMTMIDIVKS 519
AE HRQ RKH+R+ +KPGM MID+ ++
Sbjct: 247 AEVHRQVRKHMRSILKPGMLMIDLCET 273
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +3
Query: 510 CEELEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHY 617
CE LE R+LI E+GL+AG+AFPTGCS N AAH+
Sbjct: 271 CETLENMVRKLIKENGLQAGIAFPTGCSLNWVAAHW 306
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 89.0 bits (211), Expect = 3e-18
Identities = 45/87 (51%), Positives = 59/87 (67%)
Frame = +1
Query: 259 PPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHA 438
PP+IPV ELFP G FPEG+I + D+ R TSEEKR L+RL K +Y +R A
Sbjct: 138 PPSIPVDELFPSGEFPEGEIQHYK-----DDNLW--RTTSEEKRELERLQKPMYNAVRRA 190
Query: 439 AEAHRQTRKHIRNWIKPGMTMIDIVKS 519
AE HRQ RK++R+ +KPGM MID+ ++
Sbjct: 191 AEVHRQVRKYMRSILKPGMLMIDLCET 217
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +3
Query: 510 CEELEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHY 617
CE LE R+LI E+GL+AG+AFPTGCS N AAH+
Sbjct: 215 CETLENMVRKLIKENGLEAGIAFPTGCSLNCVAAHW 250
>01_06_1193 -
35306608-35306777,35306869-35306890,35306988-35306996,
35307107-35307115,35307470-35307491,35307981-35308784,
35308861-35309088,35309250-35309335,35309449-35309530,
35309630-35309778,35309992-35310105,35310961-35311059,
35311243-35311321,35311873-35312021
Length = 673
Score = 30.7 bits (66), Expect = 0.97
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +2
Query: 308 RVKLWTMVLLRVLMRELQKIV-LQVRRKELLIDYIKIFIRKSDMLLK 445
+V+ + + LL +M+ + V L+V + +L + +KI +K+DML++
Sbjct: 69 KVQFYALTLLETMMKNCGEYVQLEVAEQHVLQEMVKIIQKKNDMLVR 115
>05_01_0207 +
1493224-1493385,1493475-1493839,1494313-1494390,
1496134-1496157,1496213-1496654
Length = 356
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 444 SPQADKKTHPQLDQAWHDYDRYCEELEKTARRLIGEDGLKAGLAFP--TGCSRNH 602
SP AD Q+ +A YD + ++ GE+GLKAG A P T S +H
Sbjct: 38 SPHADDSLFKQVSEA---YDVLSDPQKRAIYDQFGEEGLKAGAAPPPTTSSSSSH 89
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +1
Query: 349 ERTAKNRFTSEEKRALDRLHKDIYQE 426
+RT K R+ SE+KR LDR HK++ ++
Sbjct: 60 KRTGKRRYPSEKKR-LDRRHKELLRK 84
>03_05_1014 -
29687343-29687410,29688054-29688191,29689246-29689294,
29689623-29689728,29690184-29690332,29690840-29690921,
29691308-29691360,29691644-29691729,29691855-29691909,
29692179-29692579,29693564-29693660,29694191-29694322,
29694426-29694476,29694659-29694751,29694917-29694992,
29695711-29695856,29696009-29696043,29696056-29696107,
29696290-29696401,29696617-29696813,29697456-29697560,
29697667-29697819,29698317-29698424,29698608-29698752,
29699374-29699432,29701397-29701441,29701677-29701730,
29701901-29702113,29702873-29702958,29704492-29704572,
29704670-29704729,29705599-29705644,29706212-29706286,
29706376-29706512,29708306-29708366,29708726-29708743,
29709710-29709743,29709811-29709902,29709997-29710029
Length = 1260
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -3
Query: 474 ADVFSCLPVGFSSMSDFLINIFM*SIKSSFLLTCKTIFCSSLINTLSRTMV 322
A V +CL +G M+ +N + S+ S L C T+ CS TL+ M+
Sbjct: 361 AVVTTCLALGTKRMAR--LNAIVRSLPSVETLGCTTVICSDKTGTLTTNMM 409
>03_01_0040 -
353861-353981,354618-354730,355034-355129,355406-355522,
356071-356169,356416-356547,356651-356827,356949-357123,
357225-357313,357981-358079
Length = 405
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 229 WKRIF*GADVPPTIPVAELFPDGNFPEGQIMDHGPAE 339
W+ + G + +A+ PDGNF +G+++ GP E
Sbjct: 73 WENLGFGLVQTDFMYIAKCGPDGNFSKGEMVPFGPIE 109
>12_02_0604 + 20920609-20922144
Length = 511
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 379 EEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIKPGMT 498
E++ +D L KDI Q AEAHR+ + I W+ T
Sbjct: 457 EKREKIDVLIKDIEQLNLEVAEAHRKRKGGIWAWLYAATT 496
>05_03_0582 -
15738503-15739301,15739385-15739642,15740585-15740670,
15740879-15740960,15741044-15741213,15742081-15742194,
15742984-15743082,15743171-15743249,15744604-15744710
Length = 597
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 308 RVKLWTMVLLRVLMREL-QKIVLQVRRKELLIDYIKIFIRKSDMLLK 445
+V+ + + LL LM+ + QV +++L + IKI +K+DM L+
Sbjct: 55 KVQFFALTLLETLMKNCGDHVHSQVVERDILQEMIKIVKKKTDMQLR 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,654,322
Number of Sequences: 37544
Number of extensions: 232771
Number of successful extensions: 687
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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