Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40307
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)         42   3e-04
SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)               32   0.32 
SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)                      28   7.0  
SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)
          Length = 708

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +3

Query: 567 GLAFPTGCSRNHCAAHY 617
           GLAFPTGCS NHCAAHY
Sbjct: 107 GLAFPTGCSLNHCAAHY 123



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +3

Query: 570 LAFPTGCSRNHCAAHY 617
           LAFPTGCS NHCAAHY
Sbjct: 2   LAFPTGCSLNHCAAHY 17


>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
          Length = 465

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 519 LEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHY 617
           LE+T +    E  LK G+AFPT  S N+C  H+
Sbjct: 61  LEETDKVYKKEKELKKGIAFPTCISVNNCVCHF 93


>SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +3

Query: 450 QADKKTHPQLDQAWHDYDRYCEELEKTARRLIGEDGLKAGLAF 578
           Q D+K    L Q   D +RY +EL   A R  G +  KA L F
Sbjct: 306 QQDEKLRADLIQRTEDVERYKKELSLAAERESGLERSKAQLEF 348


>SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)
          Length = 437

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 310 GQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIR 474
           G +   GP +  DE  A + + S +KR  DR  +   Q+++   E +RQ R  I+
Sbjct: 73  GSLFSSGPYDKDDEE-ADSIYESIDKRMDDRRKERREQKLKEEMERYRQERPKIQ 126


>SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1035

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
 Frame = +1

Query: 385 KRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMI-DIVK-S*RRLRDVLLVKMG 558
           ++ LD LH    +  +H  +  +QT++H+R+ +K     + D VK + +R+RD   VK  
Sbjct: 400 RQRLDDLHWLDEETKQHVRDKVKQTKQHVRDKVKQTKQRVRDRVKQTKQRVRD--RVKQT 457

Query: 559 SKQVWLSPQDAAATTVQRI 615
            ++V    +D A  T QR+
Sbjct: 458 KQRV----RDKAKQTKQRV 472


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 459  KKTHPQLDQAWHDYDRYCEELEKTARRLIG 548
            KK H QL +  HDY R+ E + +  + L G
Sbjct: 2525 KKKHSQLQKGLHDYTRFMEIMAELDKWLPG 2554


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,181,991
Number of Sequences: 59808
Number of extensions: 256945
Number of successful extensions: 904
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)