Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40307
(617 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117205-8|CAB55167.1| 444|Caenorhabditis elegans Hypothetical ... 93 1e-19
Z47357-5|CAA87424.1| 446|Caenorhabditis elegans Hypothetical pr... 32 0.38
Z81029-3|CAB02699.2| 207|Caenorhabditis elegans Hypothetical pr... 30 1.2
U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone... 29 2.0
AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear recep... 29 2.0
AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear recep... 29 2.0
AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear recep... 29 2.0
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 29 2.7
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 29 2.7
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 29 3.5
AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical ... 29 3.5
Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical pr... 28 4.6
AL023837-1|CAA19499.1| 718|Caenorhabditis elegans Hypothetical ... 27 8.1
>AL117205-8|CAB55167.1| 444|Caenorhabditis elegans Hypothetical
protein Y116A8A.9 protein.
Length = 444
Score = 93.1 bits (221), Expect = 1e-19
Identities = 43/89 (48%), Positives = 64/89 (71%), Gaps = 2/89 (2%)
Frame = +1
Query: 250 ADVPPTIPVAELFPDGNFPEGQIMDHGP--AEGIDERTAKNRFTSEEKRALDRLHKDIYQ 423
A++ P+ E FPDG FP G +D P +G D R A +R ++EEK+ALD +++++Q
Sbjct: 74 AEIAAMKPIDEQFPDGKFPHG--IDESPYYLKGKDGRVATDRESNEEKKALDISYEEVWQ 131
Query: 424 EIRHAAEAHRQTRKHIRNWIKPGMTMIDI 510
+ R +AEAHRQ RK++++WIKPGMTMI+I
Sbjct: 132 DYRRSAEAHRQVRKYVKSWIKPGMTMIEI 160
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/36 (80%), Positives = 31/36 (86%)
Frame = +3
Query: 510 CEELEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHY 617
CE LE T+RRLI E GL+AGLAFPTGCS NHCAAHY
Sbjct: 161 CERLETTSRRLIKEQGLEAGLAFPTGCSLNHCAAHY 196
>Z47357-5|CAA87424.1| 446|Caenorhabditis elegans Hypothetical
protein ZK1128.5 protein.
Length = 446
Score = 31.9 bits (69), Expect = 0.38
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 265 TIPVAELFPDGNFPEGQIMDHGPAEGIDERTA-KNRFTSEEKRALDRLHKDIYQEIRHAA 441
++P+ EL +G + M H P G + R A K +F+S K + L KDIY H
Sbjct: 130 SVPMWELRVEGRLLDD--MQH-PTVGANPRPAPKRKFSSFFKSLVIELDKDIYGPDNHLV 186
Query: 442 EAHR 453
E HR
Sbjct: 187 EWHR 190
>Z81029-3|CAB02699.2| 207|Caenorhabditis elegans Hypothetical
protein C01A2.4 protein.
Length = 207
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 364 NRFTSEEKRALDRLHKDIYQEIRH-AAEAHRQTRKHI 471
NR ++R +DR K++ QEI+ AA+ H +H+
Sbjct: 24 NRDLESDRRQMDRREKELEQEIKKLAAKGHNDAARHL 60
>U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform a protein.
Length = 528
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 424 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 284
P+ Y ++ Q+ PH + F +HQ P P S HQ I
Sbjct: 16 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 62
>AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 525
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 424 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 284
P+ Y ++ Q+ PH + F +HQ P P S HQ I
Sbjct: 13 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 59
>AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 534
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 424 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 284
P+ Y ++ Q+ PH + F +HQ P P S HQ I
Sbjct: 22 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 68
>AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 527
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 424 PDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 284
P+ Y ++ Q+ PH + F +HQ P P S HQ I
Sbjct: 15 PNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 61
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = +3
Query: 528 TARRLIGEDGLKAGLAFPTGCSRNHCAAH 614
TAR+L E GLK GLAF G SRN H
Sbjct: 833 TARQLTYETGLKCGLAF-GGYSRNANVQH 860
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = +3
Query: 528 TARRLIGEDGLKAGLAFPTGCSRNHCAAH 614
TAR+L E GLK GLAF G SRN H
Sbjct: 833 TARQLTYETGLKCGLAF-GGYSRNANVQH 860
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +1
Query: 253 DVPPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDR 402
D+P I V E PD + + M+ G + + KN F K + R
Sbjct: 36 DIPSYIAVQEALPDDTIEKQEAMEEGDNSKVQTKREKNFFIGTTKIIVPR 85
>AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical
protein W08E12.7 protein.
Length = 391
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 519 LEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHY 617
LEKT + E G+A PT S ++C HY
Sbjct: 68 LEKTGKLYKKEKNFTKGIAMPTCISIDNCICHY 100
>Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical
protein H05G16.1 protein.
Length = 1111
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 367 RFTSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIK 486
+ + + K+ L +LH D YQ ++ E +TR +N+ K
Sbjct: 277 KLSFKRKKLLVKLHPDSYQYLKETVEFSFETRDECKNFWK 316
>AL023837-1|CAA19499.1| 718|Caenorhabditis elegans Hypothetical
protein Y37H2C.1 protein.
Length = 718
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Frame = -3
Query: 375 CKTIFCSSLINTLSRTMVHNLTLRKVSI-------RK*FRYWYSRWDVC 250
C T S L N L+ T+V T+ +S+ RK F YWY+ +C
Sbjct: 58 CLTAENSPLKNPLTATIVRGKTVHSMSLSRVQWDNRKKFEYWYASDTLC 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,568,407
Number of Sequences: 27780
Number of extensions: 196275
Number of successful extensions: 716
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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