Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40307
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59990.2 68416.m06698 methionyl aminopeptidase, putative / me...    91   5e-19
At3g59990.1 68416.m06697 methionyl aminopeptidase, putative / me...    91   5e-19
At2g44180.1 68415.m05496 methionyl aminopeptidase, putative / me...    90   9e-19
At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplas...    29   2.5  
At1g20230.1 68414.m02527 pentatricopeptide (PPR) repeat-containi...    28   5.7  
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    27   7.5  
At1g76780.1 68414.m08935 expressed protein ; expression supporte...    27   7.5  

>At3g59990.2 68416.m06698 methionyl aminopeptidase, putative /
           methionine aminopeptidase, putative / peptidase M,
           putative similar to Methionine aminopeptidase 2 (EC
           3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
           sapiens} SP|P50579; contains Pfam profile PF00557:
           metallopeptidase family M24; supporting cDNA
           gi|11344921|gb|AF300880.1|AF300880
          Length = 439

 Score = 91.1 bits (216), Expect = 5e-19
 Identities = 45/87 (51%), Positives = 58/87 (66%)
 Frame = +1

Query: 259 PPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHA 438
           PP+IPV ELFP G FPEG+I ++      D+     R TSEEKR L+R  K IY  +R A
Sbjct: 81  PPSIPVVELFPSGEFPEGEIQEYK-----DDNLW--RTTSEEKRELERFEKPIYNSVRRA 133

Query: 439 AEAHRQTRKHIRNWIKPGMTMIDIVKS 519
           AE HRQ RK++R+ +KPGM M DI ++
Sbjct: 134 AEVHRQVRKYVRSIVKPGMLMTDICET 160



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = +3

Query: 510 CEELEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHY 617
           CE LE T R+LI E+GL+AG+AFPTGCS N  AAH+
Sbjct: 158 CETLENTVRKLISENGLQAGIAFPTGCSLNWVAAHW 193


>At3g59990.1 68416.m06697 methionyl aminopeptidase, putative /
           methionine aminopeptidase, putative / peptidase M,
           putative similar to Methionine aminopeptidase 2 (EC
           3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
           sapiens} SP|P50579; contains Pfam profile PF00557:
           metallopeptidase family M24; supporting cDNA
           gi|11344921|gb|AF300880.1|AF300880
          Length = 439

 Score = 91.1 bits (216), Expect = 5e-19
 Identities = 45/87 (51%), Positives = 58/87 (66%)
 Frame = +1

Query: 259 PPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHA 438
           PP+IPV ELFP G FPEG+I ++      D+     R TSEEKR L+R  K IY  +R A
Sbjct: 81  PPSIPVVELFPSGEFPEGEIQEYK-----DDNLW--RTTSEEKRELERFEKPIYNSVRRA 133

Query: 439 AEAHRQTRKHIRNWIKPGMTMIDIVKS 519
           AE HRQ RK++R+ +KPGM M DI ++
Sbjct: 134 AEVHRQVRKYVRSIVKPGMLMTDICET 160



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = +3

Query: 510 CEELEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHY 617
           CE LE T R+LI E+GL+AG+AFPTGCS N  AAH+
Sbjct: 158 CETLENTVRKLISENGLQAGIAFPTGCSLNWVAAHW 193


>At2g44180.1 68415.m05496 methionyl aminopeptidase, putative /
           methionine aminopeptidase, putative / peptidase M,
           putative similar to SP|P50579 Methionine aminopeptidase
           2 (EC 3.4.11.18) (MetAP 2) {Homo sapiens}; contains Pfam
           profile PF00557: metallopeptidase family M24
          Length = 441

 Score = 90.2 bits (214), Expect = 9e-19
 Identities = 44/87 (50%), Positives = 60/87 (68%)
 Frame = +1

Query: 259 PPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHA 438
           PP+IPV ELFP G+FP+G+I  +      D+     R TSEEKR ++RL K IY  +R A
Sbjct: 83  PPSIPVLELFPSGDFPQGEIQQYN-----DDNLW--RTTSEEKREMERLQKPIYNSLRQA 135

Query: 439 AEAHRQTRKHIRNWIKPGMTMIDIVKS 519
           AE HRQ RK++R+ +KPGM MID+ ++
Sbjct: 136 AEVHRQVRKYMRSILKPGMLMIDLCET 162



 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 24/36 (66%), Positives = 30/36 (83%)
 Frame = +3

Query: 510 CEELEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHY 617
           CE LE T R+LI E+GL+AG+AFPTGCS N+ AAH+
Sbjct: 160 CETLENTVRKLISENGLQAGIAFPTGCSLNNVAAHW 195


>At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplasmic
           reticulum-type (ACA6) (ECA3) nearly identical to
           SP|Q9SY55 Calcium-transporting ATPase 3, endoplasmic
           reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
           contains InterPro Accession IPR006069: Cation
           transporting ATPase
          Length = 998

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 474 ADVFSCLPVGFSSMSDFLINIFM*SIKSSFLLTCKTIFCSSLINTLSRTMV 322
           A V +CL +G   M+   +N  + S+ S   L C T+ CS    TL+  M+
Sbjct: 309 AVVTTCLALGTKKMAR--LNAIVRSLPSVETLGCTTVICSDKTGTLTTNMM 357


>At1g20230.1 68414.m02527 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 760

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 453 ADKKTHPQLDQAWHDYDRYCEELEKTARR 539
           A  K+HPQ+DQ     D   +E+ K+  R
Sbjct: 642 AGDKSHPQIDQITEKMDEISKEMRKSGHR 670


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 1088

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 388 FSPHL*NDFLQFSHQYPQ-QDHGP*FDPQESFH 293
           F PH+    LQ SHQ PQ   HG  F  Q+ ++
Sbjct: 186 FRPHMQTQGLQNSHQTPQGGPHGQQFPSQQEYN 218


>At1g76780.1 68414.m08935 expressed protein ; expression supported
           by MPSS
          Length = 1871

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 307 EGQIMDHGPAEGIDERTAKNRFTSEEKRALDR 402
           EG+I DHG  E +++   K R T  EKR  DR
Sbjct: 715 EGEISDHGEVEDVEK--GKKR-TEAEKRIKDR 743


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,060,441
Number of Sequences: 28952
Number of extensions: 182708
Number of successful extensions: 589
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)