Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40306
(301 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc... 96 8e-22
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S... 90 7e-20
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 31 0.027
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 25 3.1
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 25 3.1
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 4.2
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|... 24 5.5
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 24 5.5
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 23 7.3
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 23 7.3
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 23 7.3
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 23 9.6
SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 9.6
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 23 9.6
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual 23 9.6
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 23 9.6
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce... 23 9.6
>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 74
Score = 96.3 bits (229), Expect = 8e-22
Identities = 47/70 (67%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Frame = +1
Query: 22 MPREIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 198
MPR+I DIK FL ARRKDA S +IKKN ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1 MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60
Query: 199 LPPGLQVKEV 228
LPP L V EV
Sbjct: 61 LPPDLTVTEV 70
>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 1|||Manual
Length = 74
Score = 89.8 bits (213), Expect = 7e-20
Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Frame = +1
Query: 22 MPREIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 198
MPR++ DIK FL A R DA S ++KKN VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1 MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60
Query: 199 LPPGLQVKEV 228
LPP L V EV
Sbjct: 61 LPPALTVTEV 70
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 31.5 bits (68), Expect = 0.027
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +1
Query: 82 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQVKEVK 231
KS+ + +N P+ K K + T+VITD+E ++ +KQ +P +Q EVK
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQGGEVK 252
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 24.6 bits (51), Expect = 3.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 5 NYSSSTCRVKSKISKTF*LRRGGKTPNRSK*RRTLRMSSSRF 130
N ST + + ++K+F R +TP ++K R +L+ S F
Sbjct: 269 NSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNF 310
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 105 VLLYFDRFGVFPPRLN*KVFDIFD 34
VLLY RF V P+L +F FD
Sbjct: 98 VLLYGPRFSVLSPKLYGGIFITFD 121
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 24.2 bits (50), Expect = 4.2
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 116 SSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKLKK*SDVTRL 247
S S + TP SS N +YL ++ LKK V RL
Sbjct: 159 SYSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRL 202
>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 161
Score = 23.8 bits (49), Expect = 5.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 129 NLELDILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHV 19
N+ + R L +F VF L+ FD+ D+ +HV
Sbjct: 14 NITFTLCRGLNLQPKFAVFRVPLHVNKFDVRDYLQHV 50
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 37 KDIKDFLIKARRKDAKSVKIKKNPEN 114
K I+D+L K ++ +V + K+PEN
Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPEN 709
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 28 REIKDIKDFLIKARRKD 78
R IKD+KD KA KD
Sbjct: 300 RSIKDLKDLYEKANSKD 316
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 23.4 bits (48), Expect = 7.3
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = +1
Query: 52 FLIKARRKDAKSVKIK-----KNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQ 216
F+ K R+ KSVKIK K P+ +K + + TDK K K +
Sbjct: 891 FIEKGRKNQVKSVKIKGMTIIKAPDALK-NANLHNEVIVMQTTDKPIVLKAKSKKIHNIW 949
Query: 217 VKEVK*CN 240
V+ +K N
Sbjct: 950 VQAIKQIN 957
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -3
Query: 194 CLSFSAF--SLSVMTRVYRNLEHRTLNLTFSGF 102
C+ F + ++ TR++ +L +TL T SGF
Sbjct: 988 CIGFKSAMPEYTLRTRIWASLRSQTLYRTISGF 1020
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 23.0 bits (47), Expect = 9.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 236 HHFTSLTWRPGGKLCL 189
HH T + PG KLC+
Sbjct: 202 HHLTDRSQTPGWKLCV 217
>SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 143 NLEHRTLNLTFSGFFFILT 87
N E T++ TFSGF+ LT
Sbjct: 25 NEEGETVDFTFSGFYANLT 43
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 23.0 bits (47), Expect = 9.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 80 PNRSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKL 220
PNR+ + + SRF Q C P K +R++ L V+ L
Sbjct: 41 PNRAIGYAQIECACSRFGLQDKCKPIYGGCKNGVRSIPIQLLDVAGL 87
>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 121 FKVRCSRFLYTLVITDKEKAEKLK 192
FK+ F +LV+TD +K K+K
Sbjct: 425 FKISKQNFDESLVLTDPKKKTKIK 448
>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 167 SVMTRVYRNLEHRTLNLTFSGFFFILTD 84
S+M + N+ H+T L GF LT+
Sbjct: 253 SLMLALLSNVVHKTTGLVIGGFTLNLTN 280
>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 189
Score = 23.0 bits (47), Expect = 9.6
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 58 IKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEVK 231
+K + + K +K+K P+ + K SRF + K + SL L +VK
Sbjct: 1 MKTQTTNQKQLKVKHAPQELSSKKPVSRFREVISEPKKFTRDPRFDSLSGNLSKDKVK 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 926,161
Number of Sequences: 5004
Number of extensions: 15529
Number of successful extensions: 43
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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