Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40305
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 111 3e-25
11_01_0155 - 1287003-1287452 111 3e-25
03_06_0097 - 31632238-31632525,31633386-31633769 32 0.25
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 31 0.57
12_02_1138 - 26397585-26398682 29 1.7
07_03_0227 - 15398371-15398925 29 1.7
06_03_0062 + 16116893-16117029,16117472-16117760 29 1.7
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 29 2.3
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365... 29 3.0
01_05_0500 + 22752190-22752329,22752957-22753032,22753292-227533... 28 4.0
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 5.3
01_06_0683 - 31173763-31174635,31175146-31175436 28 5.3
09_06_0089 + 20781086-20782985,20783463-20783538,20783593-207836... 27 7.0
>12_01_0152 - 1168928-1169377
Length = 149
Score = 111 bits (268), Expect = 3e-25
Identities = 49/60 (81%), Positives = 57/60 (95%)
Frame = +1
Query: 253 SISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 432
+I+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 90 AIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
Score = 105 bits (251), Expect = 3e-23
Identities = 45/87 (51%), Positives = 62/87 (71%)
Frame = +2
Query: 5 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 184
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 185 SMVDIRVTVKGGGHVEQVYAIRQVFQR 265
+D+R+ V+GGG Q+YAIRQ +
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAK 93
>11_01_0155 - 1287003-1287452
Length = 149
Score = 111 bits (268), Expect = 3e-25
Identities = 49/60 (81%), Positives = 57/60 (95%)
Frame = +1
Query: 253 SISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 432
+I+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKFGG GARAR+QKSYR
Sbjct: 90 AIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
Score = 105 bits (251), Expect = 3e-23
Identities = 45/87 (51%), Positives = 62/87 (71%)
Frame = +2
Query: 5 REPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 184
R P VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K EPILL G+ +F
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66
Query: 185 SMVDIRVTVKGGGHVEQVYAIRQVFQR 265
+D+R+ V+GGG Q+YAIRQ +
Sbjct: 67 KDIDMRIRVRGGGKTSQIYAIRQAIAK 93
>03_06_0097 - 31632238-31632525,31633386-31633769
Length = 223
Score = 32.3 bits (70), Expect = 0.25
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +2
Query: 17 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 187
Q + GR+KTA A + G G + +N R P ++Y + P++ LG E +
Sbjct: 96 QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152
Query: 188 MVDIRVTVKGGGHVEQVYAI 247
D+ V V GGG Q AI
Sbjct: 153 SYDVFVKVHGGGLSGQAQAI 172
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 31.1 bits (67), Expect = 0.57
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +2
Query: 35 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 214
G++K + A + + G G VN + D P +L ++ + D+ TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353
Query: 215 GGGHVEQVYAIR 250
GGG QV AIR
Sbjct: 354 GGGVSGQVGAIR 365
>12_02_1138 - 26397585-26398682
Length = 365
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 207 QSRVVVM*NKFTLSDKYF-KGSDRLLPEICRRSLKEGNQ 320
+S + ++ N+ TL D+Y+ +G D +LPE+ S + G+Q
Sbjct: 206 RSFIEILDNEPTLHDRYYARGDDVMLPEVPYDSFRVGSQ 244
>07_03_0227 - 15398371-15398925
Length = 184
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -3
Query: 155 VPEVCTAAVWAQPSPMDARLHAAFH--DHACNTQLRWRF 45
+P +C A W P+ A H FH C+ + RW +
Sbjct: 23 LPPLCRAPWWPSPASSAAATHLRFHPRHRRCHPRRRWSY 61
>06_03_0062 + 16116893-16117029,16117472-16117760
Length = 141
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 110 MDARLHAAFHDHA--CNTQLRWRFSYVRILGRPGW 12
+DARL A +HA N + RWR LG+ GW
Sbjct: 26 LDARLWAVESEHARVVNPEQRWRARSTGWLGKKGW 60
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 129 DCCST-NFRNLSFCSARKNSLWSTSE*QSRVVVM 227
+CC+ + +LS C KN++W S S ++V+
Sbjct: 725 ECCNQLRYLSLSNCDVGKNAIWKISAPNSNIIVL 758
>11_04_0272 -
15631598-15631898,15633162-15633291,15636394-15636544,
15636632-15636730,15636912-15637063,15637079-15637301
Length = 351
Score = 28.7 bits (61), Expect = 3.0
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Frame = +1
Query: 178 KILYGRH--QSDSQGWWSC-RTSLRYPTSISKALI--AFYQKYVDEASKKEIKDI--LVQ 336
KI Y + QS + WW + S SI+ L AFY+KY E+ K+ K+ L Q
Sbjct: 15 KITYATYMLQSSAFEWWDAHKKSYSERISITWELFKEAFYKKYFPESVKRMKKEFLELKQ 74
Query: 337 YDRSLLVADPRRCEPKKFGGPGARA-RYQKSYR*AFKKTI 453
+ + + R P+ G++A R++ R K+ +
Sbjct: 75 VEYEIEFSRLARFAPEFVQTDGSKARRFESGLRQPLKRRV 114
>01_05_0500 +
22752190-22752329,22752957-22753032,22753292-22753351,
22754718-22754882,22756299-22756358
Length = 166
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 109 WTPVYTQHSMTTLAIRNCGGGFLTSEYLD 23
W V T H +T +A R+C G F ++LD
Sbjct: 18 WNYVVTAHKLTVVA-RSCVGNFTAPDHLD 45
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 98 NGRPLDLVEPRLLQYKLQEPILLL 169
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>01_06_0683 - 31173763-31174635,31175146-31175436
Length = 387
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +3
Query: 12 PSRPSKYSDVRKPPPQLRIASVVMECCV*TGVHWTWLSPDCCSTNFRNLSFCSARKNSLW 191
PS+P+K D PP Q +++SV VH +P + R C K W
Sbjct: 224 PSKPAKKKDAPAPPAQAQLSSV--------PVHSGGSAPAAAAGEGRRCLHCETDKTPQW 275
Query: 192 ST 197
T
Sbjct: 276 RT 277
>09_06_0089 +
20781086-20782985,20783463-20783538,20783593-20783669,
20784301-20784405,20784601-20784659
Length = 738
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -1
Query: 274 RSEPLKYLS-DSVNLFYMTTTLDCHSDVDHREFFLAEQKDRFLKFVLQQSGL 122
++EP+ +L + + + Y T LD +D LA DR+ K ++++ G+
Sbjct: 139 QNEPILFLIWEQIAVLY-TGNLDARADAAASLVSLARDNDRYSKLIIEEDGV 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,557,560
Number of Sequences: 37544
Number of extensions: 346197
Number of successful extensions: 928
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -