Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40305
         (526 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             112   2e-25
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        33   0.11 
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)             27   7.2  
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  27   7.2  
SB_56942| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)                     27   9.5  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  112 bits (269), Expect = 2e-25
 Identities = 51/60 (85%), Positives = 57/60 (95%)
 Frame = +1

Query: 253 SISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 432
           +ISK+L+A+YQKYVDE SKKEI+DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKSYR
Sbjct: 48  AISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107



 Score = 62.5 bits (145), Expect(2) = 1e-10
 Identities = 27/41 (65%), Positives = 33/41 (80%)
 Frame = +2

Query: 143 KLQEPILLLGKEKFSMVDIRVTVKGGGHVEQVYAIRQVFQR 265
           K++EPILLLGKE+F  VDIRV VKGGGH  ++YAIRQ   +
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISK 51



 Score = 20.6 bits (41), Expect(2) = 1e-10
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +2

Query: 17 QAVQVFGRK 43
          Q+VQVFGRK
Sbjct: 3  QSVQVFGRK 11


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +1

Query: 235 SLRYPTSISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 378
           ++++ T +   L AF QKY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 43  AVKHKTHVDTVL-AFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 187 REFFLAEQKDRFLKFVLQQSGLNQ--VQWTP 101
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)
          Length = 771

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -1

Query: 307 LRLRLHISGRRRSE-PLKYLSDSVNLF--YMTTTLDCHSDVDHREFFLAEQKDRFLKFVL 137
           LR   H   R  S+ PL+Y SD+   +  +    LDC    +   F  A +K + +  +L
Sbjct: 530 LRYESHAPLRYESDAPLRYESDAPLRYESHAPLPLDCSDIQEKTPFCAARRKQKQIAKLL 589

Query: 136 QQSGLNQ 116
           QQ  LN+
Sbjct: 590 QQCLLNR 596


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 151 LKFVLQQSGLNQVQWTPVYT 92
           LK     SG+N++ W PVYT
Sbjct: 198 LKIQAHTSGVNRLDWNPVYT 217


>SB_56942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 409 HGHLDHRTSWARSDAGQPPANSYRIELG 326
           HG L+H + WA   A Q P    +I+LG
Sbjct: 30  HGRLNHESVWA--SASQSPGEYIQIDLG 55


>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
          Length = 873

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 114 TWLSPDCCSTNFRNLSFCSARKNSLWSTS 200
           TW+ P C S+NF + S  ++  NS+ STS
Sbjct: 716 TWICPCCGSSNFSSGSIFTSSSNSI-STS 743


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,296,380
Number of Sequences: 59808
Number of extensions: 369916
Number of successful extensions: 825
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)