Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40305
         (526 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)           115   2e-26
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...   115   2e-26
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...   113   5e-26
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con...    38   0.004
At5g21130.1 68418.m02522 hypothetical protein                          27   5.8  
At4g11090.1 68417.m01801 expressed protein other hypothetical pr...    27   5.8  
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot...    27   5.8  
At5g47360.1 68418.m05837 pentatricopeptide (PPR) repeat-containi...    27   7.7  
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi...    27   7.7  

>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score =  115 bits (276), Expect = 2e-26
 Identities = 52/60 (86%), Positives = 58/60 (96%)
 Frame = +1

Query: 253 SISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 432
           SI+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 87  SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146



 Score =  109 bits (261), Expect = 1e-24
 Identities = 45/79 (56%), Positives = 65/79 (82%)
 Frame = +2

Query: 17  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 196
           ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK +F+ V+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 197 IRVTVKGGGHVEQVYAIRQ 253
           +R+ V GGGH  QVYAIRQ
Sbjct: 68  MRIRVNGGGHTSQVYAIRQ 86


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score =  115 bits (276), Expect = 2e-26
 Identities = 52/60 (86%), Positives = 58/60 (96%)
 Frame = +1

Query: 253 SISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 432
           SI+KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 87  SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146



 Score =  109 bits (262), Expect = 1e-24
 Identities = 46/79 (58%), Positives = 65/79 (82%)
 Frame = +2

Query: 17  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 196
           ++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK +F+ V+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 197 IRVTVKGGGHVEQVYAIRQ 253
           +R+ V GGGH  QVYAIRQ
Sbjct: 68  MRIRVNGGGHTSQVYAIRQ 86


>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score =  113 bits (273), Expect = 5e-26
 Identities = 51/60 (85%), Positives = 58/60 (96%)
 Frame = +1

Query: 253 SISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 432
           SI+KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRCE KKFGGPGARAR+QKSYR
Sbjct: 87  SIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146



 Score =  110 bits (265), Expect = 5e-25
 Identities = 46/79 (58%), Positives = 65/79 (82%)
 Frame = +2

Query: 17  QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 196
           ++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ VD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 197 IRVTVKGGGHVEQVYAIRQ 253
           +R+   GGG+  +VYAIRQ
Sbjct: 68  MRIRATGGGNTSRVYAIRQ 86


>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
           contains Pfam profile PF00380: ribosomal protein S9
          Length = 430

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 24/72 (33%), Positives = 37/72 (51%)
 Frame = +2

Query: 35  GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 214
           GR+K + A  + + G G  +VN +  D+  P +L ++      L   +     DI+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368

Query: 215 GGGHVEQVYAIR 250
           GGG   QV AI+
Sbjct: 369 GGGTTGQVGAIQ 380


>At5g21130.1 68418.m02522 hypothetical protein
          Length = 281

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 283 GRRRSEPLKYLSDSVNLFYMTTTLDCHSDVD 191
           G R   P+K+   SV  + MT T+DC   VD
Sbjct: 231 GLRIKAPVKFKVGSVTTWTMTITVDCKITVD 261


>At4g11090.1 68417.m01801 expressed protein other hypothetical
           proteins - Arabidopsis thaliana
          Length = 432

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 105 VHWTWLSPDCCSTNFRNLSFCSARKNSLWS 194
           ++W W   DC    F +L F    +N  W+
Sbjct: 121 LNWKWKPNDCSLPRFDSLRFLQLMRNKSWA 150


>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 652

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 154 TYPFARQGKILYGRHQSDSQGWWSCRTSLRYPTSISKALIAFYQKY 291
           +Y F +    +   H S++Q  WS      +P+S+ KA+  +  K+
Sbjct: 345 SYKFRQAESSVRINHNSETQSGWSVDWESEFPSSVVKAVNKYGMKH 390


>At5g47360.1 68418.m05837 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 477

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 232 TSLRYPTSISKALIAFYQKYVDEAS-KKEIKDILVQYDRSLLVADPRRCEPKKF 390
           ++LR+ T++S A   + Q     ++ +KE+    VQ D S +    RRC+P +F
Sbjct: 22  SALRFLTTVSAAERLYGQLQGCTSNLEKELASANVQLDSSCINEVLRRCDPNQF 75


>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 579

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 316 FPSLRLRLHISGRRRSEPLKYLSDS 242
           FP L  + H SG   S P+K+LS S
Sbjct: 28  FPRLSSQFHFSGTLNSIPIKHLSTS 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,659,896
Number of Sequences: 28952
Number of extensions: 256214
Number of successful extensions: 799
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)