Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40304
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     29   0.030
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    29   0.030
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           29   0.030
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    29   0.030
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    25   0.64 
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           24   1.1  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   4.5  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   4.5  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   7.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.9  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   7.9  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   7.9  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 296 ATFLVTPSTKVSSL--PDHLTAPPTDPKFPP 210
           ++FL+ P T + +   P H++    DPKFPP
Sbjct: 3   SSFLMNPGTALPTYQQPQHISGVVVDPKFPP 33


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 296 ATFLVTPSTKVSSL--PDHLTAPPTDPKFPP 210
           ++FL+ P T + +   P H++    DPKFPP
Sbjct: 3   SSFLMNPGTALPTYQQPQHISGVVVDPKFPP 33


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 296 ATFLVTPSTKVSSL--PDHLTAPPTDPKFPP 210
           ++FL+ P T + +   P H++    DPKFPP
Sbjct: 3   SSFLMNPGTALPTYQQPQHISGVVVDPKFPP 33


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 296 ATFLVTPSTKVSSL--PDHLTAPPTDPKFPP 210
           ++FL+ P T + +   P H++    DPKFPP
Sbjct: 3   SSFLMNPGTALPTYQQPQHISGVVVDPKFPP 33


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 290 FLVTPSTKVSSLPDHLTAPPTDPKF 216
           F   PSTK ++ P  +T PP  P F
Sbjct: 177 FTTKPSTKPTNKPVVVTKPPQAPPF 201


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 459 FAYDVGNIPQTLLYGVLSHVPLEASQISGEVT 364
           FA  +G   Q  +Y V+ H P ++  +SG +T
Sbjct: 8   FAMTLGQ--QNKMYNVIQHSPQQSIIVSGSIT 37


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 173 LSVNYKFPIPDLKVGTLD 226
           L +NYK   PDLK   LD
Sbjct: 128 LEINYKLIDPDLKELNLD 145


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 142 YPEQCHQIRQPQCQ 183
           YP +C  I +P CQ
Sbjct: 29  YPPRCPPIYEPSCQ 42


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -3

Query: 403 CPIGSESNKWGGHCYWP 353
           CP G   N   G C WP
Sbjct: 138 CPNGLVYNDKAGICSWP 154


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 171 LPDLVALFRVSQVC*QVLSPGALITQYSVIFTT 73
           +P L +LFR S++C    S     + + ++F T
Sbjct: 141 VPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFT 173


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 171 LPDLVALFRVSQVC*QVLSPGALITQYSVIFTT 73
           +P L +LFR S++C    S     + + ++F T
Sbjct: 141 VPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFT 173


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 171 LPDLVALFRVSQVC*QVLSPGALITQYSVIFTT 73
           +P L +LFR S++C    S     + + ++F T
Sbjct: 141 VPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFT 173


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 171 LPDLVALFRVSQVC*QVLSPGALITQYSVIFTT 73
           +P L +LFR S++C    S     + + ++F T
Sbjct: 141 VPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFT 173


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 695 VRYFLVVGVPVVEHGL 648
           ++Y+ V G P++ H L
Sbjct: 159 LKYYQVTGTPIIFHNL 174


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 695 VRYFLVVGVPVVEHGL 648
           ++Y+ V G P++ H L
Sbjct: 159 LKYYQVTGTPIIFHNL 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,173
Number of Sequences: 336
Number of extensions: 3697
Number of successful extensions: 23
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)