Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40304
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    62   8e-11
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    26   6.4  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   6.4  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    26   6.4  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   6.4  

>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 62.1 bits (144), Expect = 8e-11
 Identities = 25/69 (36%), Positives = 49/69 (71%)
 Frame = +3

Query: 531 NLEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWNANYEKITDIIVPR 710
           N++KKQ+G+L  ++LA++V +E  +  S+YLT + + VP ++   +  +YE +TD+++PR
Sbjct: 157 NMQKKQSGNLSQKSLANIVHEEDVVHGSDYLTNVFIAVPLNLEKQFLNSYETLTDLVIPR 216

Query: 711 STQLVHQDN 737
           S + + QD+
Sbjct: 217 SAKKLDQDS 225


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 284 VTPSTKVSSLPDHLTAPPTDP 222
           V P+ + SS P  L  PPTDP
Sbjct: 274 VAPNNEGSSNPPSLVNPPTDP 294


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 730 WWTSWVERGTIMSVIFS*LAFQSLNMDLGTMTRSVVRYSLSKMKCSF 590
           W  S   RGT  ++  +  +  ++ +DL T T++ V Y+   ++ SF
Sbjct: 220 WLASKTARGTSCALSSAVASNLAIGLDLVTATQNAVSYTQRALEMSF 266


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 409 KYPIKQSLRNIADIISKQV-GQIDADLKVKSSAYTLSKETY 528
           +Y   + LR+  + I K + G +DAD++  S  + L KE Y
Sbjct: 630 EYMAAEHLRSTFEPIEKLLLGMLDADVETVSEYFHLLKEAY 670


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 286 RKVAQYLGEVLEDQRDKLHENLMAN 360
           +KVAQ L E+L DQR  L  + +AN
Sbjct: 921 KKVAQRLTELLSDQRVHLPSSKIAN 945


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,159
Number of Sequences: 5004
Number of extensions: 60396
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)