Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40304
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272... 70 2e-12
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451... 31 1.3
12_02_0417 - 18896949-18897269,18897340-18897424,18899561-188996... 30 2.2
10_02_0180 + 6292190-6292654,6293923-6294915 30 2.2
09_02_0540 + 10410372-10411331 29 2.9
05_03_0463 + 14334409-14334568,14334736-14334911,14335274-143353... 29 3.9
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638... 29 5.1
07_03_0482 + 18589573-18589728,18589889-18590065,18590518-185906... 28 6.7
11_01_0809 + 7201431-7202243,7202646-7203347,7216678-7216755 28 8.9
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954... 28 8.9
03_05_0086 - 20642873-20643033,20643384-20643504,20643698-206437... 28 8.9
>05_07_0331 -
29324967-29326256,29326919-29327020,29327226-29327278,
29327628-29327674,29327762-29327841,29327933-29328016,
29328383-29328433,29328925-29329050,29329231-29329347,
29329710-29329851,29329986-29330053,29330509-29330608,
29330713-29330840,29330929-29330997,29331083-29331205
Length = 859
Score = 70.1 bits (164), Expect = 2e-12
Identities = 32/75 (42%), Positives = 51/75 (68%)
Frame = +3
Query: 513 LKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWNANYEKIT 692
++ L + +KQTGSL R+L++LVK E + SE+L TLL +VPK DW ++YE +
Sbjct: 149 VRSQLSAINRKQTGSLAVRDLSNLVKPEDMVT-SEHLVTLLAVVPKYSQKDWLSSYESLD 207
Query: 693 DIIVPRSTQLVHQDN 737
+VPRS++ +++DN
Sbjct: 208 TFVVPRSSKKLYEDN 222
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/101 (32%), Positives = 51/101 (50%)
Frame = +1
Query: 256 KLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLR 435
K + F+EGV+ K+ + + E LE L + + TYLTRF WD KYP L+
Sbjct: 64 KSNVFIEGVSHKIRRQIEE-LERAGGVESGALTVDGVPVDTYLTRFVWDEGKYPTMSPLK 122
Query: 436 NIADIISKQVGQIDADLKVKSSAYTLSKETYTI*RRNRPGA 558
I I QV +I+ D+KV+ + Y + + R + G+
Sbjct: 123 EIVGSIQSQVSKIEDDMKVRGAEYNNVRSQLSAINRKQTGS 163
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +2
Query: 86 TEYWVISAPGD---KTCQQTWDTLNNATKSGNLSVN-YKFPIPDLKVGTLDQLV 235
T YW++S P T W L ++ + Y+F +PDL+VGTLD L+
Sbjct: 3 TRYWIVSLPVQTPGSTANSLWARLQDSISRHSFDTPLYRFNVPDLRVGTLDSLL 56
>03_01_0614 +
4515515-4515540,4515988-4516209,4516681-4516768,
4517084-4517123,4517259-4517305,4517464-4517584,
4517931-4518091
Length = 234
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/43 (30%), Positives = 29/43 (67%)
Frame = +1
Query: 316 LEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIA 444
L+++ ++LH+ + + DLPT++ +++ A Y KQ+L ++A
Sbjct: 187 LDEESEELHQKFLEKDIDLPTFVQKYKKLRAAYH-KQALLHLA 228
>12_02_0417 -
18896949-18897269,18897340-18897424,18899561-18899656,
18900418-18900476,18901285-18901359
Length = 211
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 157 GIVQGIPSLLTGLVARGTDH 98
G+V GIP LL G + RG DH
Sbjct: 161 GVVNGIPQLLQGEMHRGADH 180
>10_02_0180 + 6292190-6292654,6293923-6294915
Length = 485
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +3
Query: 18 KLFAVSDNLL*TALIFKFLW*K*LNTG*SVPLATRPVSRLGIP*TMPPNQATSVSTINSL 197
+++ VSD T + KF W + G +PLA S+LG T N A VST+ S+
Sbjct: 396 RVYEVSDIKWTTVNLLKFGWAEFAGGG--IPLAGDLTSKLGSDHTRCKNSAGEVSTVVSM 453
Query: 198 FL 203
L
Sbjct: 454 LL 455
>09_02_0540 + 10410372-10411331
Length = 319
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = +3
Query: 393 PMGHG*VPHKAESAEYCRHHKQTGRTDRRGSEGQVLRLHALKGNLHNLEKKQTGSLLTRN 572
P G + + E +H RRG+ V++L+ K +E Q +L T
Sbjct: 217 PTSFGFKHYNSYLVESDQHELMAVLLGRRGTLNHVIKLNEKKMEWEKVESLQGRTLFTGT 276
Query: 573 LADLVKKEHF 602
L +VKK F
Sbjct: 277 LTSMVKKTKF 286
>05_03_0463 +
14334409-14334568,14334736-14334911,14335274-14335357,
14335374-14335685
Length = 243
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 498 LRLHALKGNLHNLEKKQTG--SLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWN 671
LR H + E + G L T N+ D+++K H D ++ + PKS DW+
Sbjct: 72 LRSHRNLSDAQKAEVVELGVCGLRTCNIMDVMEKNHGGYDQTFIKAMGGKCPKSFITDWD 131
>01_07_0353 +
42962769-42962972,42963062-42963138,42963571-42963817,
42963907-42964476,42964998-42965171,42965514-42965640,
42965719-42965828,42966707-42966907,42966999-42967966,
42968110-42968358,42968760-42969105
Length = 1090
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 476 SICPTCLLMMSAIFRRLC 423
S+CP CL ++S F+RLC
Sbjct: 199 SVCPNCLPLISKHFQRLC 216
>07_03_0482 +
18589573-18589728,18589889-18590065,18590518-18590688,
18590913-18591029,18591614-18591742,18592210-18592311,
18592412-18592498,18592585-18592638,18594880-18595016,
18595181-18595235,18596133-18596188,18596275-18596334,
18596442-18596529,18596634-18597371,18597451-18597511,
18598301-18598403,18599180-18599311,18599393-18599477
Length = 835
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 165 QATSVSTINSLFLTLRWELWISWWGCQMIW 254
Q ++ ++ LFL ++ SWW C M W
Sbjct: 304 QEKALVSLAKLFLEFKYAPTPSWWDCTMYW 333
>11_01_0809 + 7201431-7202243,7202646-7203347,7216678-7216755
Length = 530
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/84 (25%), Positives = 35/84 (41%)
Frame = +1
Query: 283 TRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIADIISKQ 462
+ K A L ++LED R L+ + L T L QW AK + S + D++ +
Sbjct: 133 SEKEAHKLDKMLEDHRTSLYPGCEQGHKKLDTTLELLQW-KAKNGV--SDKAFGDLLKRI 189
Query: 463 VGQIDADLKVKSSAYTLSKETYTI 534
+ K+ + Y K Y +
Sbjct: 190 KNILPGGNKLPETTYEAKKIVYPL 213
>05_03_0460 -
14294931-14295110,14295200-14295234,14295358-14295457,
14295548-14295669,14296272-14296367,14296489-14298949
Length = 997
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -1
Query: 444 GNIPQTLLYGVLSHVPLEASQISGEVTVIGHQVFMELIALIFKYLSKVLGYLPGHAFDES 265
G P + Y ++ V + +I ++ + V+ E + Y S + G+ DE+
Sbjct: 645 GLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEA 704
Query: 264 VKL 256
+KL
Sbjct: 705 IKL 707
>03_05_0086 -
20642873-20643033,20643384-20643504,20643698-20643744,
20643882-20643921,20644331-20644418,20644949-20645161,
20645589-20645628,20646332-20646416
Length = 264
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +1
Query: 298 QYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIA 444
Q L L+++ ++LH+ + + DLPT++ + + Y KQ+L ++A
Sbjct: 211 QKLMAKLDEESEELHQKFLEKDIDLPTFVQKHKKLRTAYH-KQALLHLA 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,407,339
Number of Sequences: 37544
Number of extensions: 430373
Number of successful extensions: 1231
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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