Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40304
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   1e-11
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)              31   0.97 
SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.97 
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)            31   1.3  
SB_45012| Best HMM Match : RVT_2 (HMM E-Value=1.2e-17)                 30   2.3  
SB_30586| Best HMM Match : RVT_2 (HMM E-Value=0.4)                     30   2.3  
SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16)                   29   3.0  
SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09)                   29   3.9  
SB_1094| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_2163| Best HMM Match : TP2 (HMM E-Value=0.34)                       29   5.2  
SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)         28   6.9  
SB_49316| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 31/52 (59%), Positives = 40/52 (76%)
 Frame = +2

Query: 83  MTEYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVG 238
           M EYW++SAPG+KT QQT++ L   ++   +S  YKFPIP+LKVGTLD LVG
Sbjct: 1   MAEYWLVSAPGEKTQQQTYEALK--SRMVGMSPVYKFPIPELKVGTLDTLVG 50


>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
          Length = 1290

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 566 PQLGRPSQEGALHLGQRVPD-HTPGHRAQVH-VQRLER 673
           P  G   Q   +H  QR    H PGH+ QVH + R +R
Sbjct: 803 PSTGHKGQVHPIHWAQRASSFHPPGHKGQVHPIHRAQR 840



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +2

Query: 566  PQLGRPSQEGALHLGQRVPD-HTPGHRAQVH-VQRLERQLRENNGHYRAALHP 718
            P  G   Q   +   QR    H PGH+ QVH + R +R    +   ++  +HP
Sbjct: 969  PSPGHKGQVHPIPRAQRASSSHPPGHKGQVHSIHRAQRASSSHPTGHKGQVHP 1021


>SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = -1

Query: 441 NIPQTLLYGVLSHVPLEASQISGEVTVIGHQVFMELIALIFKYLSKVLGY-LPGHAFD-E 268
           ++P   L  ++  VPL        V  +G   F+  +AL+F +L+ VLGY L G  F   
Sbjct: 516 SVPSFPLLLLIPVVPLILMAFIRRVRKLGPVSFISNLALLFAFLA-VLGYMLTGWTFKLN 574

Query: 267 SVKLARSSDSPTN*SKVPTLRSGIGNL 187
            ++L   S  P    +V +   GIG L
Sbjct: 575 EIRLFSWSTFPVFFGQVTSAYQGIGTL 601


>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
          Length = 496

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 308 PRYWATFLVTPSTKVSSLPDHLTAPPTDPKFPP 210
           PRY  + L  P + +  LP HL  PP   ++PP
Sbjct: 395 PRYPPSHLRYPPSSLRYLPSHLRYPPPPLRYPP 427


>SB_45012| Best HMM Match : RVT_2 (HMM E-Value=1.2e-17)
          Length = 412

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 468 TDRRGSEGQVLRLHALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLL 635
           TDRR + G    L+      +   KKQT   L+   A+ V   + + +S YLT LL
Sbjct: 306 TDRRSTSGYCFSLNDTGPPFYWKSKKQTSVALSSCEAEYVALAYAVQESLYLTQLL 361


>SB_30586| Best HMM Match : RVT_2 (HMM E-Value=0.4)
          Length = 283

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 468 TDRRGSEGQVLRLHALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLL 635
           TDRR + G    L+      +   KKQT   L+   A+ V   + + +S YLT LL
Sbjct: 141 TDRRSTSGYCFSLNDTGPPFYWKSKKQTSVALSSCEAEYVALAYAVQESLYLTQLL 196


>SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16)
          Length = 339

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/50 (34%), Positives = 19/50 (38%)
 Frame = +2

Query: 578 RPSQEGALHLGQRVPDHTPGHRAQVHVQRLERQLRENNGHYRAALHPARP 727
           R SQ G    GQ  PD TP  R      R+   L E   H     + A P
Sbjct: 159 RSSQSGGQTNGQTTPDSTPSKRKTDRPTRVRTVLNEKQLHTLRTCYNANP 208


>SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09)
          Length = 1337

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 213 WELWISWWGCQMIWQ 257
           WE WI  W CQ+ WQ
Sbjct: 641 WEPWIEPWKCQLHWQ 655


>SB_1094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 468 TDRRGSEGQVLRLHALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLL 635
           TDRR + G    ++      +   KKQT   L+   A+ V   + + +S YLT LL
Sbjct: 28  TDRRSTSGYCFSVNDTGPPFYWKSKKQTSVALSSYEAEYVALAYAVQESLYLTQLL 83


>SB_2163| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1074

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 539 EETDRELVDPQLGRPSQEGALHL-GQRVPDHTPGHRAQVHVQR-LERQLRENN 691
           + TD  ++       S E  +HL   R+   TP H+ Q+H  R  ERQ ++ N
Sbjct: 703 QSTDTSIMSELQSYLSDEDIVHLRDSRLTKPTPEHKDQIHSSRNSERQSKKRN 755


>SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)
          Length = 798

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = -1

Query: 510 RVGGGLDLQIRVDLSDLFAYDV--GN--IPQTL 424
           R GGGLD  IR D+     YDV  GN  IP+TL
Sbjct: 203 RRGGGLDFYIRSDIKCKRLYDVELGNDSIPETL 235


>SB_49316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 104 SAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVG 238
           SA    +   +W T  ++T S + SV +   IP      L QL+G
Sbjct: 219 SASASSSISSSWSTTQSSTFSASKSVKHVLTIPPRTTIILTQLIG 263


>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 363 Q*PPHLFDSLPMGHG*VP-HKAESAEYCRHHKQTGRTDRRGSEGQ 494
           Q P    +SLP+G G +P  K+  A   +   QTG TD+ GS GQ
Sbjct: 501 QQPKEEKESLPVG-GIIPIPKSALATRDKAGSQTGSTDQTGSHGQ 544


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,892,267
Number of Sequences: 59808
Number of extensions: 473256
Number of successful extensions: 1411
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)