Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40304
(738 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024762-2|AAF59474.3| 384|Caenorhabditis elegans Vacuolar h at... 107 8e-24
AB009567-1|BAA75067.1| 384|Caenorhabditis elegans Vha11 protein... 107 8e-24
AC024762-3|AAO91689.2| 133|Caenorhabditis elegans Vacuolar h at... 70 2e-12
Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z82282-5|CAB05270.1| 555|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z50756-3|CAI79214.1| 305|Caenorhabditis elegans Hypothetical pr... 28 7.9
AL117204-6|CAB55149.2| 833|Caenorhabditis elegans Hypothetical ... 28 7.9
>AC024762-2|AAF59474.3| 384|Caenorhabditis elegans Vacuolar h
atpase protein 11, isoforma protein.
Length = 384
Score = 107 bits (257), Expect = 8e-24
Identities = 48/84 (57%), Positives = 63/84 (75%)
Frame = +1
Query: 256 KLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLR 435
KLDT E V RK+ QY EVLE+ + K+ ENL+ N D+ TY+T+FQW+ AKYP+KQSL+
Sbjct: 62 KLDTSAEAVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYPLKQSLK 121
Query: 436 NIADIISKQVGQIDADLKVKSSAY 507
+++II KQ+ QID DLKVKS Y
Sbjct: 122 VLSEIIGKQISQIDNDLKVKSLTY 145
Score = 76.6 bits (180), Expect = 2e-14
Identities = 33/79 (41%), Positives = 56/79 (70%)
Frame = +3
Query: 498 LRLHALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWNAN 677
L + LK L ++++K GSLLT++LADLVK + F+L+SEYL T++V+VPK +W
Sbjct: 143 LTYNNLKNALASMDRKTVGSLLTKDLADLVKADDFVLNSEYLQTVIVVVPKISVKEWEQK 202
Query: 678 YEKITDIIVPRSTQLVHQD 734
Y ++ ++VP S++L+ ++
Sbjct: 203 YATLSSMVVPGSSKLLTEE 221
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/50 (64%), Positives = 36/50 (72%)
Frame = +2
Query: 89 EYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVG 238
EYW+IS PG+K WD LN +T GN S N K+ IPDLKVGTLDQLVG
Sbjct: 8 EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVG 55
>AB009567-1|BAA75067.1| 384|Caenorhabditis elegans Vha11 protein
protein.
Length = 384
Score = 107 bits (257), Expect = 8e-24
Identities = 48/84 (57%), Positives = 63/84 (75%)
Frame = +1
Query: 256 KLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLR 435
KLDT E V RK+ QY EVLE+ + K+ ENL+ N D+ TY+T+FQW+ AKYP+KQSL+
Sbjct: 62 KLDTSAEAVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYPLKQSLK 121
Query: 436 NIADIISKQVGQIDADLKVKSSAY 507
+++II KQ+ QID DLKVKS Y
Sbjct: 122 VLSEIIGKQISQIDNDLKVKSLTY 145
Score = 76.6 bits (180), Expect = 2e-14
Identities = 33/79 (41%), Positives = 56/79 (70%)
Frame = +3
Query: 498 LRLHALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWNAN 677
L + LK L ++++K GSLLT++LADLVK + F+L+SEYL T++V+VPK +W
Sbjct: 143 LTYNNLKNALASMDRKTVGSLLTKDLADLVKADDFVLNSEYLQTVIVVVPKISVKEWEQK 202
Query: 678 YEKITDIIVPRSTQLVHQD 734
Y ++ ++VP S++L+ ++
Sbjct: 203 YATLSSMVVPGSSKLLTEE 221
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/50 (64%), Positives = 36/50 (72%)
Frame = +2
Query: 89 EYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVG 238
EYW+IS PG+K WD LN +T GN S N K+ IPDLKVGTLDQLVG
Sbjct: 8 EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVG 55
>AC024762-3|AAO91689.2| 133|Caenorhabditis elegans Vacuolar h
atpase protein 11, isoformb protein.
Length = 133
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/50 (64%), Positives = 36/50 (72%)
Frame = +2
Query: 89 EYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVG 238
EYW+IS PG+K WD LN +T GN S N K+ IPDLKVGTLDQLVG
Sbjct: 8 EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVG 55
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +1
Query: 256 KLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANN 363
KLDT E V RK+ QY EVLE+ + K+ ENL+ N
Sbjct: 62 KLDTSAEAVIRKLVQYFTEVLEEDKSKIAENLVIGN 97
>Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical
protein T05E11.3 protein.
Length = 760
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 537 EKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWNANYEKITDII 701
E KQ +T++ + + HF + E ++ VPK ND NY K+ + I
Sbjct: 333 EYKQFYKSITKDSEEPLSHVHFSAEGEVSFRSILYVPKKSPNDMFQNYGKVIENI 387
>Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical
protein F58B3.5 protein.
Length = 917
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = -1
Query: 528 VGFL*ERVGGGLDLQIRVDLSDLFA--YDVG-NIPQTLLYGVLSHVPLEASQ 382
VG L RVG + + D L+ DVG + P+T++ G++ HVPL+ Q
Sbjct: 757 VGRLDMRVGRIIKCEKHPDADALYVEQIDVGESAPRTVVSGLVRHVPLDQMQ 808
>Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical
protein M04C3.2 protein.
Length = 606
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Frame = +3
Query: 516 KGNLHNLEKKQT-GSLLTRNLADLVKKE---HFILDS-----EY---LTTLLVIVPKSMF 659
K NL EK+ G ++T + D++ KE F+LD EY + L++VP M
Sbjct: 234 KSNLAQREKEPVRGGIITTLIRDILIKETIIEFLLDQKNTSEEYGHSMGKTLLVVPPDMI 293
Query: 660 NDWNANYEKITD 695
W EK+ +
Sbjct: 294 ESWKKLLEKLLE 305
>Z82282-5|CAB05270.1| 555|Caenorhabditis elegans Hypothetical
protein T07G12.5 protein.
Length = 555
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +1
Query: 259 LDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPT----YLTRFQWDMAKYPIKQ 426
LD G TR+ ++ E+ ED + + N LP+ + R+ W + P+
Sbjct: 467 LDNITGGATRRQRGFVSEIDEDDDVEEQATVEMNGYALPSKLNQFFLRYSW-LTYLPVIP 525
Query: 427 SLRNIADIISK 459
S R I +I K
Sbjct: 526 SEREIREIEEK 536
>Z50756-3|CAI79214.1| 305|Caenorhabditis elegans Hypothetical
protein T08D10.4 protein.
Length = 305
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 133 LLTGLVARGTDHPVFSHFHHKNLKINAVYNK-LSETANNFGETTR 2
+LT + + + V HFH K+LKI + NK + E N+ T+
Sbjct: 93 VLTSISSDLASNNVTEHFHDKSLKIEQMKNKTIRENDNSHNNQTQ 137
>AL117204-6|CAB55149.2| 833|Caenorhabditis elegans Hypothetical
protein Y116A8C.13 protein.
Length = 833
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 633 LVIVPKSMFNDWNANYEK 686
L+IVP S+ N+W A ++K
Sbjct: 270 LIIVPSSLVNNWKAEFDK 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,817,893
Number of Sequences: 27780
Number of extensions: 348296
Number of successful extensions: 1133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -