Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40304
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g12840.1 68414.m01491 vacuolar ATP synthase subunit C (VATC) ... 78 7e-15
At3g59180.1 68416.m06598 hypothetical protein contains a novel d... 31 0.80
At1g14390.1 68414.m01706 leucine-rich repeat transmembrane prote... 31 0.80
At5g63720.1 68418.m07998 hypothetical protein 29 3.2
At2g25450.1 68415.m03048 2-oxoglutarate-dependent dioxygenase, p... 29 4.3
At2g30840.1 68415.m03760 2-oxoglutarate-dependent dioxygenase, p... 28 5.6
At1g34270.1 68414.m04253 exostosin family protein contains Pfam ... 28 5.6
At1g09820.1 68414.m01104 pentatricopeptide (PPR) repeat-containi... 28 5.6
At4g17330.1 68417.m02600 agenet domain-containing protein contai... 28 7.4
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 28 7.4
At2g30830.1 68415.m03759 2-oxoglutarate-dependent dioxygenase, p... 28 7.4
At5g06440.2 68418.m00722 expressed protein similar to unknown pr... 27 9.8
At5g06440.1 68418.m00721 expressed protein similar to unknown pr... 27 9.8
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 27 9.8
At2g18480.1 68415.m02153 mannitol transporter, putative similar ... 27 9.8
At1g55910.1 68414.m06412 metal transporter, putative (ZIP11) sim... 27 9.8
>At1g12840.1 68414.m01491 vacuolar ATP synthase subunit C (VATC) /
V-ATPase C subunit / vacuolar proton pump C subunit
(DET3) identical to vacuolar ATP synthase subunit C
SP:Q9SDS7 from [Arabidopsis thaliana]
Length = 375
Score = 77.8 bits (183), Expect = 7e-15
Identities = 37/82 (45%), Positives = 58/82 (70%)
Frame = +3
Query: 492 QVLRLHALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWN 671
+V + ++G L+ + +KQ+GSL R+L++LVK E I++SE+L TLL +VPK DW
Sbjct: 139 RVAEYNNIRGQLNAINRKQSGSLAVRDLSNLVKPED-IVESEHLVTLLAVVPKYSQKDWL 197
Query: 672 ANYEKITDIIVPRSTQLVHQDN 737
A YE +TD +VPRS++ + +DN
Sbjct: 198 ACYETLTDYVVPRSSKKLFEDN 219
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/84 (39%), Positives = 49/84 (58%)
Frame = +1
Query: 256 KLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLR 435
K ++FVEGV++K+ + + E LE L + + +YLTRF WD AKYP L+
Sbjct: 61 KSNSFVEGVSQKIRRQIEE-LERISGVESNALTVDGVPVDSYLTRFVWDEAKYPTMSPLK 119
Query: 436 NIADIISKQVGQIDADLKVKSSAY 507
+ D I QV +I+ DLKV+ + Y
Sbjct: 120 EVVDNIQSQVAKIEDDLKVRVAEY 143
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 86 TEYWVISAPGDKTCQQTWDTLNNATKSGNLSVN-YKFPIPDLKVGTLDQLV 235
+ YWV+S P + W+ L + Y+F IP+L+VGTLD L+
Sbjct: 3 SRYWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIPNLRVGTLDSLL 53
>At3g59180.1 68416.m06598 hypothetical protein contains a novel
domain with similarity to F-box domain;
Length = 475
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 198 FLTLRWELWISWWGCQMIWQA*HFRR 275
FL + W LWI +W C+ I + H RR
Sbjct: 7 FLQVLWILWIEYWHCKAILLSKHRRR 32
>At1g14390.1 68414.m01706 leucine-rich repeat transmembrane protein
kinase, putative similar to putative receptor-like
protein kinase GI:2947063 from [Arabidopsis thaliana]
Length = 747
Score = 31.1 bits (67), Expect = 0.80
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -3
Query: 706 GTIMSVIFS*LAFQSLNMDLGTMTRSVVRYSLSKMKCSFLTRSAKLRVNKLPVCFFSK 533
G+I + S + Q+L++ ++ S+ SL K L S L KLP CF SK
Sbjct: 239 GSIPRFLLSLPSLQNLSLAQNLLSGSLPNSSLCNSKLRILDVSRNLLTGKLPSCFSSK 296
>At5g63720.1 68418.m07998 hypothetical protein
Length = 492
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 561 LTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFN 662
L + L D EHF+ S L T L + PK++ +
Sbjct: 42 LLKRLLDFASHEHFVTQSNLLATQLRVFPKTVLH 75
>At2g25450.1 68415.m03048 2-oxoglutarate-dependent dioxygenase,
putative similar to 2A6 (GI:599622) and tomato ethylene
synthesis regulatory protein E8 (SP|P10967)
Length = 359
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -1
Query: 468 SDLFAYDVGNIPQTLLYGVLSHVPL--EASQISGEVTVIGHQVFMELIALIFKYLSKVLG 295
+DL+ + TL + VP + ++ GE+ + + M+L L+F+ LS+ LG
Sbjct: 135 ADLYESPAASWRDTLSCVMAPDVPKAQDLPEVCGEIMLEYSKEVMKLAELMFEILSEALG 194
Query: 294 YLPGH 280
P H
Sbjct: 195 LSPNH 199
>At2g30840.1 68415.m03760 2-oxoglutarate-dependent dioxygenase,
putative similar to 2A6 (GI:599622) and tomato ethylene
synthesis regulatory protein E8 (SP|P10967)
Length = 362
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -1
Query: 465 DLFAYDVGNIPQTLLYGVLSHVPL--EASQISGEVTVIGHQVFMELIALIFKYLSKVLGY 292
DL++ N TL + VP + I GE+ + + M+L LIF+ LS+ LG
Sbjct: 140 DLYSSPSANWRDTLSCFMAPDVPETEDLPDICGEIMLEYAKRVMKLGELIFELLSEALGL 199
Query: 291 LPGH 280
P H
Sbjct: 200 NPNH 203
>At1g34270.1 68414.m04253 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 477
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 305 RYWATFLVTPSTKVSSLPDHLTAPPTDP-KFPP 210
+YW++ TP +++ S PDH T P K+PP
Sbjct: 75 KYWSSS--TPDSRIPSDPDHPTRKTHSPDKYPP 105
>At1g09820.1 68414.m01104 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 606
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 142 IPSLLTGLVARGTDHPVFSHFHHKNLKINAVYNKL 38
I S L G V G+DH V S FH ++ N N +
Sbjct: 120 IRSFLDGFVRNGSDHQVHSIFHAISMCDNVCVNSI 154
>At4g17330.1 68417.m02600 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 1058
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 539 EETDRELVD-PQLGRPSQEGALHLG 610
++T ++VD P LG+P Q G L+LG
Sbjct: 780 KDTSMKIVDDPDLGKPPQTGVLNLG 804
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 695 VRYFLVVGVPVVEHGLGHDDQ-ECGQVLAVQDEVLL 591
V+Y+ V G V+ LGH D CG V D +L+
Sbjct: 160 VKYWDVAGATVISDLLGHKDYVRCGDCSPVNDSMLV 195
>At2g30830.1 68415.m03759 2-oxoglutarate-dependent dioxygenase,
putative similar to 2A6 (GI:599622) and tomato ethylene
synthesis regulatory protein E8 (SP|P10967)
Length = 358
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 465 DLFAYDVGNIPQTLLYGVLSHVPL--EASQISGEVTVIGHQVFMELIALIFKYLSKVLGY 292
DL++ N TL + VP + I E+ + + M+L LIF+ LS+ LG
Sbjct: 136 DLYSSQAANWRDTLTMVMAPDVPQAGDLPVICREIMLEYSKRMMKLGELIFELLSEALGL 195
Query: 291 LPGH 280
P H
Sbjct: 196 KPNH 199
>At5g06440.2 68418.m00722 expressed protein similar to unknown
protein (gb|AAF23188.1)
Length = 479
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 615 EYLTTLLVIVPKSMFNDWNANYEKITDIIVPRSTQLVHQD 734
EY LV++ + +D N+ TDII+P S V D
Sbjct: 179 EYFKDGLVVILLNTISDLNSIGVSSTDIIIPESPDAVRMD 218
>At5g06440.1 68418.m00721 expressed protein similar to unknown
protein (gb|AAF23188.1)
Length = 405
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 615 EYLTTLLVIVPKSMFNDWNANYEKITDIIVPRSTQLVHQD 734
EY LV++ + +D N+ TDII+P S V D
Sbjct: 105 EYFKDGLVVILLNTISDLNSIGVSSTDIIIPESPDAVRMD 144
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 636 VIVPKSMFNDWNANYEKITD 695
V+V K MF+DW Y +TD
Sbjct: 510 VVVEKIMFSDWENGYNAMTD 529
>At2g18480.1 68415.m02153 mannitol transporter, putative similar to
mannitol transporter [Apium graveolens var. dulce]
GI:12004316; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 508
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -1
Query: 426 LLYGVLSHVPLEASQISGEVT-VIGHQVFMELIALIFKYLSKVLGYLPGH 280
+L G+L+ L S +G+ + VIG + + L A+IF S ++GY P +
Sbjct: 63 VLAGILNLCALVGSLTAGKTSDVIGRRYTIALSAVIFLVGSVLMGYGPNY 112
>At1g55910.1 68414.m06412 metal transporter, putative (ZIP11)
similar to putative zinc transporter ZIP2 [Arabidopsis
thaliana] gi|3252868|gb|AAC24198; member of the Zinc
(Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
Length = 326
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -2
Query: 686 FLVVGVPVVEHGLG--HDDQECGQV 618
FLV+ VP + HG G HDD E V
Sbjct: 11 FLVLVVPCLSHGTGGDHDDDEASHV 35
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,062,541
Number of Sequences: 28952
Number of extensions: 330421
Number of successful extensions: 1014
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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