Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40303
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 71 2e-13
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 66 4e-12
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 60 4e-10
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 59 5e-10
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 57 3e-09
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 56 6e-09
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 54 1e-08
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 53 4e-08
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 43 5e-05
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 36 0.004
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 36 0.007
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 35 0.012
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 35 0.012
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 35 0.012
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 33 0.029
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 29 0.61
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 29 0.81
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 28 1.4
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 27 2.5
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 27 3.3
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 26 4.3
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 26 4.3
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 5.7
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 5.7
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 25 7.6
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 10.0
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 10.0
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 70.5 bits (165), Expect = 2e-13
Identities = 28/54 (51%), Positives = 41/54 (75%)
Frame = +1
Query: 97 KQKKLQLWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHSISAWMQEMN 258
K KLQ+WDTAGQERFR ++ YYR H ++IVYDVT ++F+++ W+QE++
Sbjct: 55 KTVKLQIWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEID 107
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 66.1 bits (154), Expect = 4e-12
Identities = 27/56 (48%), Positives = 41/56 (73%)
Frame = +1
Query: 97 KQKKLQLWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHSISAWMQEMNPM 264
K+ KLQ+WDTAGQE+FR S+ ++YYR V+VYDVT ++F +S+W+ ++ M
Sbjct: 60 KRIKLQIWDTAGQEKFR-SVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAM 114
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 59.7 bits (138), Expect = 4e-10
Identities = 24/53 (45%), Positives = 37/53 (69%)
Frame = +1
Query: 97 KQKKLQLWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHSISAWMQEM 255
K+ K Q+WDTAGQER+R ++ YYR +IVYD+TK +F ++ W++E+
Sbjct: 57 KKIKAQIWDTAGQERYR-AITSAYYRGAVGALIVYDITKQSSFDNVGRWLKEL 108
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 59.3 bits (137), Expect = 5e-10
Identities = 22/50 (44%), Positives = 36/50 (72%)
Frame = +1
Query: 106 KLQLWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHSISAWMQEM 255
KL++WDTAGQER+ KS+ YYRN + ++VYD+T+ + +W++E+
Sbjct: 65 KLEIWDTAGQERY-KSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKEL 113
Score = 30.3 bits (65), Expect = 0.27
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = +3
Query: 288 LVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHKLYSKQ 467
L GNK D + A+ A + + FETSA +NV +F +A KL +
Sbjct: 125 LAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSA---KTAENVNELFTAIAKKLPLED 181
Query: 468 PLRVISVAGEVSKG 509
L G V++G
Sbjct: 182 KLN--QARGAVNRG 193
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 56.8 bits (131), Expect = 3e-09
Identities = 23/53 (43%), Positives = 36/53 (67%)
Frame = +1
Query: 97 KQKKLQLWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHSISAWMQEM 255
K+ KLQ+WDTAGQERFR ++ YYR ++++YDVT ++F ++ W +
Sbjct: 56 KRIKLQIWDTAGQERFR-TITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNV 107
Score = 45.6 bits (103), Expect = 7e-06
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +3
Query: 255 ESHGLMNAPRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIF 434
E H N ++L+GNKCDC + +++ Q LAD+ G+ E SA + NV+ F
Sbjct: 108 EQHASENVYKILIGNKCDC-EDQRQVSFEQGQALADELGVKFLEASAKTNV---NVDEAF 163
Query: 435 LTLAHKL 455
TLA ++
Sbjct: 164 FTLAREI 170
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 55.6 bits (128), Expect = 6e-09
Identities = 23/50 (46%), Positives = 35/50 (70%)
Frame = +1
Query: 106 KLQLWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHSISAWMQEM 255
+LQLWDTAGQERFR S++ Y R+ +IVYD+T +F + W++++
Sbjct: 61 RLQLWDTAGQERFR-SLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDV 109
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 54.4 bits (125), Expect = 1e-08
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = +1
Query: 109 LQLWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHSISAWMQE 252
LQLWDTAGQERF+ S+ +YR VIVY+V ++F S+ W QE
Sbjct: 59 LQLWDTAGQERFQ-SLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQE 105
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 52.8 bits (121), Expect = 4e-08
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +1
Query: 109 LQLWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHSISAWMQE 252
LQLWDTAGQERF +S+ +YR V+VYDV ++F ++ +W E
Sbjct: 59 LQLWDTAGQERF-QSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDE 105
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 42.7 bits (96), Expect = 5e-05
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 97 KQKKLQLWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHSISA-WMQEMNPM 264
K +L LWDTAGQE + + Y + H +++ + + P++ ++S W++E+N +
Sbjct: 54 KSVQLALWDTAGQEEYERLRPMSYAK-AHIILVGFAIDSPDSLENVSTKWIEEINTL 109
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 106 KLQLWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHSI-SAWMQEM 255
+L LWDTAGQE + + + Y + H V+I + V PE+ ++ W+ E+
Sbjct: 55 ELALWDTAGQEDYDR-LRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEV 104
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 35.5 bits (78), Expect = 0.007
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 115 LWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHSISAWMQEM 255
+WDTAGQE+ + YY +I++DVT T+ ++ W +++
Sbjct: 62 VWDTAGQEKLG-GLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDL 107
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 34.7 bits (76), Expect = 0.012
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 73 ASQDIPGLKQKKLQLWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHSI-SAWMQ 249
A ++ G + +L LWDTAGQE + + + Y + H ++I + V P++ ++ W+
Sbjct: 45 ADVEVDG-RHVELALWDTAGQEDYDR-LRPLSYPDSHVILICFAVDSPDSLDNVQEKWIS 102
Query: 250 EM 255
E+
Sbjct: 103 EV 104
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 34.7 bits (76), Expect = 0.012
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +1
Query: 109 LQLWDTAGQERFRKSMVQ----HYYRNVHAVVIVYDVTKPE 219
L LWD GQE F ++ + H +RNV ++ V+DV E
Sbjct: 53 LNLWDCGGQEAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 34.7 bits (76), Expect = 0.012
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 106 KLQLWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHS-ISAWMQEMN 258
+L LWDTAGQE + + Y + H ++I + V ++ + I+ W+ E++
Sbjct: 62 ELSLWDTAGQEEY-DQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVS 112
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 33.5 bits (73), Expect = 0.029
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 88 PGLKQKKLQLWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHSIS-AWMQEM 255
P K +L LWDTAGQE + + + Y N + +++ + + P + ++++ W E+
Sbjct: 59 PNSKVIELALWDTAGQEEYDR-LRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEV 114
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 29.1 bits (62), Expect = 0.61
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 97 KQKKLQLWDTAGQERFRKSMVQHYYRNVHAVVIVYD 204
K K +WD GQ++ R + +HY+ ++ V D
Sbjct: 63 KNIKFNVWDVGGQDKIR-PLWRHYFTGTKGLIFVVD 97
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 28.7 bits (61), Expect = 0.81
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 97 KQKKLQLWDTAGQERFRKSMVQH---YYRNVHAVVIVYDVTKPETFHSISAWMQEMN 258
KQ L DT Q+ + Q +Y VH V ++TK T +S+S ++E N
Sbjct: 176 KQGSTSLTDTENQKAHPAAAPQSLTPFYIQVHDPHTVKEITKSHTVYSVSTRLEEHN 232
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 659 ENVSFDPFLYLCLDHNRPTILSCFNVIFSCID-NYSDRNCNQLSSV 525
E V+ DP + + LD N PT+ C S YS +C +++
Sbjct: 281 ERVAVDPLMDISLDINEPTLQGCLERFVSKEKVQYSCHSCGSKNAI 326
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 659 ENVSFDPFLYLCLDHNRPT 603
+N SFDPF YL LD P+
Sbjct: 336 DNNSFDPFAYLGLDPKNPS 354
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 115 LWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHSISAWMQEMNPM 264
L T +++F+K M + + V+A +I V + F IS WM N M
Sbjct: 31 LCHTTNEQQFKKLMTEMFEYIVYAHIIRGLVLEVGDFAGISLWMGPGNNM 80
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.2 bits (55), Expect = 4.3
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +1
Query: 181 HAVVIVYDVTKPETFHSISAWMQEMNPM 264
HA +V + +PE ++ ++ W +E+ P+
Sbjct: 199 HAASLVCEDLQPEWYNKLAYWQEELAPL 226
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 4.3
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +3
Query: 279 PRVLVGNKCDCGTPESRLATTYAQRLADKYGMPLFETSALLDSECDNVESIFLTLAHKL 455
P VLV NKCD E ++ ++LA ETSA L NVE F +L +
Sbjct: 115 PVVLVANKCDL-EAERVVSRAEGEQLAKSMHCLYVETSAKLRL---NVEEAFYSLVRTI 169
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/67 (20%), Positives = 32/67 (47%)
Frame = +1
Query: 64 SVNASQDIPGLKQKKLQLWDTAGQERFRKSMVQHYYRNVHAVVIVYDVTKPETFHSISAW 243
S++A+++ P QK+ W+T+ E +S+ ++ ++ +Y T T S +
Sbjct: 155 SLSAAEEKPNFLQKRKYHWETSLDESDAESISSGSLMSITSISEMYGPTVASTSRSSTQL 214
Query: 244 MQEMNPM 264
+ P+
Sbjct: 215 SDQRYPL 221
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -1
Query: 656 NVSFD-PFLYLCLDHNRPT 603
N S+D PF LCLD N PT
Sbjct: 488 NYSYDLPFSGLCLDMNEPT 506
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -3
Query: 363 YQLISE--HKWWLVWIQEYHSHIY 298
+QL S+ + WWL + + H H+Y
Sbjct: 102 HQLYSDWMYVWWLSYTAKQHGHVY 125
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Frame = +3
Query: 381 FETSALLDSECDNVESIFLTLAHKL-----YSKQPLRVISVAGEVSKGWSHC 521
F+ + L SE DN + + L Y K PL+ I G W C
Sbjct: 29 FQHALTLMSEADNSSDLLIPLISDFLIWFYYQKTPLKWIPFLGHFFNTWQSC 80
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -2
Query: 466 CLEYNLCAKVKNIDSTLSHSESNSADVSN 380
CLE N +KV N+DS L SN AD N
Sbjct: 427 CLETNTNSKVINVDSLL---VSNGADQIN 452
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,695
Number of Sequences: 5004
Number of extensions: 57060
Number of successful extensions: 180
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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