Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40303
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.50 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.1  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 50  INKKCQLTPARIYLD*SKKNSSYGTLLDKKDFENQWC 160
           IN KC L           KN + G+L  KK+F N++C
Sbjct: 80  INLKCSLVEFS-----ENKNCNAGSLTVKKNFANKYC 111


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 90  WIEAKKTPVMGHCWTR 137
           WI +   PV+  CW+R
Sbjct: 380 WINSGMNPVIYACWSR 395


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 656 NVSFDPFLYLCLDHNR 609
           NVS D + YLC+  N+
Sbjct: 554 NVSEDAYRYLCMPENQ 569


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 656 NVSFDPFLYLCLDHNR 609
           NVS D + YLC+  N+
Sbjct: 554 NVSEDAYRYLCMPENQ 569


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 488 HTNNSQWLFRV 456
           +TNNS+W F+V
Sbjct: 211 YTNNSKWDFKV 221


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 334  ASLDSGVPQSHLLPTRTL 281
            A++    PQ H+LP +TL
Sbjct: 1003 ANIKQQSPQQHVLPGKTL 1020


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,176
Number of Sequences: 438
Number of extensions: 3873
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)