Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40302
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   117   2e-27
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   117   2e-27
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   3.3  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   7.6  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   7.6  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  117 bits (282), Expect = 2e-27
 Identities = 49/74 (66%), Positives = 60/74 (81%)
 Frame = +2

Query: 32  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 211
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 212 TCQVAYSRIEGDHI 253
           TCQ+  SR+ GD++
Sbjct: 61  TCQIVSSRVNGDYV 74



 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 51/108 (47%), Positives = 70/108 (64%)
 Frame = +3

Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK 689
           GAMKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ ++
Sbjct: 161 GAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQ 220

Query: 690 RQFSKYIKLGVTADAIEAIYQESP*AIRADSIPPRRKELKKDSVKQKA 833
           +QFS  I  G+ +D +E IY E+   IR D   P  ++  KD+   KA
Sbjct: 221 KQFSGLIADGIESDQLEDIYAEAYAKIRED---PSFQKSGKDAAAFKA 265



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 30/80 (37%), Positives = 41/80 (51%)
 Frame = +1

Query: 262 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 441
           A+S ELPRYG+K GL N+ AAY+TG                              E +++
Sbjct: 78  AHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIED 137

Query: 442 GPGAFRCYLDVGLARTTTGA 501
           GP  F+ +LDVGL RT+TG+
Sbjct: 138 GPRPFKVFLDVGLKRTSTGS 157


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  117 bits (282), Expect = 2e-27
 Identities = 49/74 (66%), Positives = 60/74 (81%)
 Frame = +2

Query: 32  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 211
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 212 TCQVAYSRIEGDHI 253
           TCQ+  SR+ GD++
Sbjct: 61  TCQIVSSRVNGDYV 74



 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 51/108 (47%), Positives = 70/108 (64%)
 Frame = +3

Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK 689
           GAMKGA DGGL +PHS  RFPG+D E+++ + E  R +I+G HVAEYM  L  DDE+ ++
Sbjct: 161 GAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQ 220

Query: 690 RQFSKYIKLGVTADAIEAIYQESP*AIRADSIPPRRKELKKDSVKQKA 833
           +QFS  I  G+ +D +E IY E+   IR D   P  ++  KD+   KA
Sbjct: 221 KQFSGLIADGIESDQLEDIYAEAYAKIRED---PSFQKSGKDAAAFKA 265



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 30/80 (37%), Positives = 41/80 (51%)
 Frame = +1

Query: 262 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 441
           A+S ELPRYG+K GL N+ AAY+TG                              E +++
Sbjct: 78  AHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIED 137

Query: 442 GPGAFRCYLDVGLARTTTGA 501
           GP  F+ +LDVGL RT+TG+
Sbjct: 138 GPRPFKVFLDVGLKRTSTGS 157


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 361 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 269
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 707 HKTRSHCRCY*SHLPRKPISH 769
           HK + HC C+    PR P+ H
Sbjct: 167 HKCKEHCSCHHDKFPR-PVPH 186


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -2

Query: 319 QHNLSDQP-SHHNVATHV-NKQRTNMVTFNPR 230
           QH LSDQP S +N  ++V +++R+N V+   R
Sbjct: 831 QHKLSDQPRSRNNSISNVSHRERSNSVSSKSR 862


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,296
Number of Sequences: 5004
Number of extensions: 69190
Number of successful extensions: 201
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)