Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40302
(839 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 149 4e-36
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 100 1e-21
SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10) 31 0.88
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 1.2
SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 1.2
SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 1.2
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 1.2
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1) 30 2.7
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065) 28 8.2
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 28 8.2
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029) 28 8.2
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 149 bits (360), Expect = 4e-36
Identities = 71/102 (69%), Positives = 84/102 (82%)
Frame = +3
Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK 689
GA+KGAVDGGL +PHS+KRFPGYD+ESK F+AEVHR HIFG HVAEYMRSL ++DE+S+K
Sbjct: 193 GALKGAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFGKHVAEYMRSLAEEDEESYK 252
Query: 690 RQFSKYIKLGVTADAIEAIYQESP*AIRADSIPPRRKELKKD 815
RQFS YIK GV AD+IE IY+ + AIRAD P +K KKD
Sbjct: 253 RQFSAYIKNGVDADSIEGIYKAAHQAIRAD--PVHKKAEKKD 292
Score = 92.7 bits (220), Expect = 3e-19
Identities = 45/81 (55%), Positives = 50/81 (61%)
Frame = +1
Query: 259 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 438
+AY+HELP +GVKVGLTNYAAAY TG EYNVE VD
Sbjct: 109 SAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVESVD 168
Query: 439 NGPGAFRCYLDVGLARTTTGA 501
PGAFRC+LDVGLART+TGA
Sbjct: 169 GSPGAFRCFLDVGLARTSTGA 189
Score = 80.6 bits (190), Expect = 1e-15
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = +2
Query: 95 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 220
RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 100 bits (240), Expect = 1e-21
Identities = 48/82 (58%), Positives = 52/82 (63%)
Frame = +1
Query: 256 CAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPV 435
CAAY+HELPRYGVKVGLTNYAAAY TG EYNVE +
Sbjct: 13 CAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVESI 72
Query: 436 DNGPGAFRCYLDVGLARTTTGA 501
D PGAFRC+LDVGLART+TGA
Sbjct: 73 DGSPGAFRCFLDVGLARTSTGA 94
Score = 32.7 bits (71), Expect = 0.38
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 510 GAMKGAVDGGLNVPH 554
GA+KGAVDGGL +PH
Sbjct: 98 GALKGAVDGGLEIPH 112
>SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)
Length = 475
Score = 31.5 bits (68), Expect = 0.88
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = -1
Query: 707 VLAELSLERILIILFKTSHVFSNMQTKDVSPVYFSIEL--FGFCIIARESFDGMRNIEAT 534
VLAE+ +E+ F + + V +++E FGF + E D MR + +T
Sbjct: 329 VLAEVPIEKRAAPTFDLD--LDELPVERALGVRWNVETDTFGFKVSNTEKADTMRGVLST 386
Query: 533 VNSTLHSSKTRAPVVVRAK 477
++S APV++R K
Sbjct: 387 ISSVFDPLNFAAPVIMRGK 405
>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 599 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 477
+ FGF + E D MR + +T++S APV++R K
Sbjct: 564 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 604
>SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 266
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 599 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 477
+ FGF + E D MR + +T++S APV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 266
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 599 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 477
+ FGF + E D MR + +T++S APV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 599 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 477
+ FGF + E D MR + +T++S APV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 780
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 599 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 477
+ FGF + E D MR + +T++S APV++R K
Sbjct: 212 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 252
>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1244
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 599 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 477
+ FGF + E D MR + +T++S APV++R K
Sbjct: 881 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 921
>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1515
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 599 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 477
+ FGF + E D MR + +T++S APV++R K
Sbjct: 1159 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 1199
>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
Length = 298
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 579 DAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 713
D+ K+ NAE+ RA +++ ++S D+E + R+F + K
Sbjct: 157 DSSVKRGNAEIRRARFRATTISQVVQSFRSDEERNSVRKFIAHYK 201
>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
Length = 557
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -2
Query: 370 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTFNPRVGHLACYIF 203
++ + ++L D ++ L PS A+ +NKQ T V+F P G LA F
Sbjct: 180 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 235
>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
Length = 232
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 118 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 11
ISFPFTT E Y +V F+ N LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154
>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
Length = 1769
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -2
Query: 370 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTFNPRVGHLACYIF 203
++ + ++L D ++ L PS A+ +NKQ T V+F P G LA F
Sbjct: 340 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 395
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,606,738
Number of Sequences: 59808
Number of extensions: 532741
Number of successful extensions: 1491
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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