Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40302
(839 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S... 107 1e-23
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso... 106 2e-23
At2g36610.1 68415.m04488 homeobox-leucine zipper family protein ... 31 0.95
At5g20550.1 68418.m02440 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 6.7
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr... 28 6.7
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr... 28 6.7
>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
ribosomal protein L5 GB:P49625 from [Oryza sativa]
Length = 301
Score = 107 bits (256), Expect = 1e-23
Identities = 48/76 (63%), Positives = 58/76 (76%)
Frame = +2
Query: 32 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 211
M FVK K+ YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 212 TCQVAYSRIEGDHIGA 259
Q+ + I GD + A
Sbjct: 61 VAQIVSASIAGDIVKA 76
Score = 107 bits (256), Expect = 1e-23
Identities = 51/106 (48%), Positives = 75/106 (70%)
Frame = +3
Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK 689
GA+KGA+DGGL++PHS KRF G+ E+K+ +AE+HR +I+G HV+ YM+ L +D+ + +
Sbjct: 160 GALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQ 219
Query: 690 RQFSKYIKLGVTADAIEAIYQESP*AIRADSIPPRRKELKKDSVKQ 827
FS YIK GV A++IE +Y++ AIRAD P K+ K + KQ
Sbjct: 220 THFSAYIKKGVEAESIEELYKKVHAAIRAD---PNPKKTVKPAPKQ 262
Score = 67.7 bits (158), Expect = 9e-12
Identities = 36/80 (45%), Positives = 44/80 (55%)
Frame = +1
Query: 259 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 438
+AY+HELP+YG+ VGLTNYAAAY TG +++VEP D
Sbjct: 77 SAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTD 136
Query: 439 NGPGAFRCYLDVGLARTTTG 498
+ FR LDVGL RTTTG
Sbjct: 137 S-RRPFRALLDVGLIRTTTG 155
>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
protein L5, rice
Length = 301
Score = 106 bits (254), Expect = 2e-23
Identities = 48/76 (63%), Positives = 58/76 (76%)
Frame = +2
Query: 32 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 211
M FVK K+ YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1 MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 212 TCQVAYSRIEGDHIGA 259
Q+ + I GD + A
Sbjct: 61 VAQIVSASIAGDIVKA 76
Score = 106 bits (254), Expect = 2e-23
Identities = 49/106 (46%), Positives = 76/106 (71%)
Frame = +3
Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK 689
GA+KGA+DGGL++PHS KRF G+ E+K+ +AE+HR +I+G HV+ YM+ L +D+ + +
Sbjct: 160 GALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQ 219
Query: 690 RQFSKYIKLGVTADAIEAIYQESP*AIRADSIPPRRKELKKDSVKQ 827
FS YIK GV A++IE +Y++ AIRA+ P K+ +K + K+
Sbjct: 220 THFSAYIKKGVEAESIEEMYKKVHAAIRAE---PNHKKTEKSAPKE 262
Score = 67.7 bits (158), Expect = 9e-12
Identities = 36/80 (45%), Positives = 44/80 (55%)
Frame = +1
Query: 259 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 438
+AY+HELP+YG+ VGLTNYAAAY TG +++VEP D
Sbjct: 77 SAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTD 136
Query: 439 NGPGAFRCYLDVGLARTTTG 498
+ FR LDVGL RTTTG
Sbjct: 137 S-RRPFRALLDVGLIRTTTG 155
>At2g36610.1 68415.m04488 homeobox-leucine zipper family protein
similar to homeobox protein PpHB8 (GP:7415628)
[Physcomitrella patens]; contains PfamPF00046: Homeobox
domain
Length = 185
Score = 31.1 bits (67), Expect = 0.95
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +3
Query: 504 CLGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDS 683
CLG M GA L+VP ++ GY ES FN + + +E ++ LE+ ++
Sbjct: 35 CLGTMMGAQQDILHVPLAMVE-SGYGEESNSFNGQEKKKKKM---TSEQLKFLERSFQEE 90
Query: 684 FKRQFSKYIKL 716
K + +KL
Sbjct: 91 IKLNPDRKMKL 101
>At5g20550.1 68418.m02440 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to leucoanthocyanidin dioxygenase
[Malus domestica][SP|P51091], flavonol synthase [Petunia
x hybrida][GI:311658]; contains PF03171 2OG-Fe(II)
oxygenase superfamily domain
Length = 349
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = -2
Query: 361 EAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTF 239
+ + + + DQ+ ++ + + P H V T+ K+R ++ TF
Sbjct: 260 DTILINVGDQMEIMSNGIYKSPVHR-VVTNTEKERISVATF 299
>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 302
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +2
Query: 50 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 223
VKN + + ++ KR+ EGKT+ +K++ +D+ + P + +SN + + ++
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133
>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 304
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +2
Query: 50 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 223
VKN + + ++ KR+ EGKT+ +K++ +D+ + P + +SN + + ++
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,698,021
Number of Sequences: 28952
Number of extensions: 358372
Number of successful extensions: 878
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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