Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40299
(484 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A6YPG5 Cluster: 40S ribosomal protein S11; n=7; Eukaryo... 116 3e-25
UniRef50_P62280 Cluster: 40S ribosomal protein S11; n=65; Eukary... 115 6e-25
UniRef50_A0BVQ1 Cluster: Chromosome undetermined scaffold_130, w... 96 3e-19
UniRef50_P26781 Cluster: 40S ribosomal protein S11; n=73; Eukary... 96 4e-19
UniRef50_P79013 Cluster: 40S ribosomal protein S11; n=2; Dikarya... 95 1e-18
UniRef50_Q15GB4 Cluster: 60S ribosomal protein 11; n=1; Rhodomon... 93 3e-18
UniRef50_Q7XLC9 Cluster: OSJNBa0070C17.20 protein; n=11; Eukaryo... 91 2e-17
UniRef50_Q9U9A0 Cluster: Putative ribosomal protein S11; n=8; Eu... 90 3e-17
UniRef50_Q42068 Cluster: Ribosomal protein 40S-S11; n=1; Arabido... 85 8e-16
UniRef50_Q4QCN7 Cluster: Ribosomal protein s11 homolog; n=16; Eu... 85 1e-15
UniRef50_Q3LW88 Cluster: Ribosomal protein S11; n=1; Bigelowiell... 72 6e-12
UniRef50_Q8SS53 Cluster: 40S RIBOSOMAL PROTEIN S11; n=1; Encepha... 69 4e-11
UniRef50_Q2QAS1 Cluster: Ribosomal protein S17; n=2; environment... 60 2e-08
UniRef50_UPI0000D9F1CD Cluster: PREDICTED: similar to ribosomal ... 60 3e-08
UniRef50_Q9YF81 Cluster: 30S ribosomal protein S17P; n=4; Thermo... 58 1e-07
UniRef50_A3H7C0 Cluster: Ribosomal protein S17; n=4; Thermoprote... 55 7e-07
UniRef50_Q74NJ4 Cluster: 30S ribosomal protein S17P; n=1; Nanoar... 55 1e-06
UniRef50_Q8ZWL3 Cluster: 30S ribosomal protein S17P; n=3; Pyroba... 53 4e-06
UniRef50_Q8TW21 Cluster: 30S ribosomal protein S17P; n=24; Archa... 53 4e-06
UniRef50_Q8PV41 Cluster: 30S ribosomal protein S17P; n=5; Methan... 51 2e-05
UniRef50_P12741 Cluster: 30S ribosomal protein S17P; n=8; Euryar... 49 6e-05
UniRef50_A1RXG3 Cluster: Ribosomal protein S17; n=1; Thermofilum... 46 6e-04
UniRef50_Q9HIR8 Cluster: 30S ribosomal protein S17P; n=3; Euryar... 45 0.001
UniRef50_Q8TP90 Cluster: Putative 30S ribosomal protein S17P-lik... 42 0.006
UniRef50_A0RVY2 Cluster: Ribosomal protein S17; n=2; Thermoprote... 39 0.068
UniRef50_A7BRH2 Cluster: Ribosomal protein S17; n=1; Beggiatoa s... 35 0.84
UniRef50_A1UB26 Cluster: Putative uncharacterized protein; n=3; ... 35 1.1
UniRef50_Q7M8E2 Cluster: 30S ribosomal protein S17; n=11; Epsilo... 33 2.6
UniRef50_P38519 Cluster: 30S ribosomal protein S17; n=7; Bacteri... 33 3.4
UniRef50_Q1RLD3 Cluster: Zinc finger protein; n=1; Ciona intesti... 33 4.5
UniRef50_Q601K5 Cluster: 30S ribosomal protein S17; n=4; Mycopla... 32 5.9
UniRef50_UPI000156174A Cluster: PREDICTED: similar to NBPF5 prot... 32 7.8
UniRef50_A4M9T1 Cluster: 30S ribosomal protein S17; n=2; Bacteri... 32 7.8
UniRef50_A0TER1 Cluster: Putative uncharacterized protein precur... 32 7.8
UniRef50_A7NUP3 Cluster: Chromosome chr18 scaffold_1, whole geno... 32 7.8
>UniRef50_A6YPG5 Cluster: 40S ribosomal protein S11; n=7;
Eukaryota|Rep: 40S ribosomal protein S11 - Triatoma
infestans (Assassin bug)
Length = 194
Score = 116 bits (279), Expect = 3e-25
Identities = 54/60 (90%), Positives = 57/60 (95%)
Frame = +3
Query: 75 ADRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
+ +KPLR +K VGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI
Sbjct: 65 SSKKPLRRYKSVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 124
Score = 115 bits (277), Expect = 5e-25
Identities = 50/57 (87%), Positives = 54/57 (94%)
Frame = +2
Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
RRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDVE D+VT+GECRPLSKTVRFNVLKV
Sbjct: 125 RRDYLHYVRKYNRFEKRHKNMSVHLSPCFRDVEIGDVVTVGECRPLSKTVRFNVLKV 181
Score = 56.4 bits (130), Expect = 3e-07
Identities = 24/29 (82%), Positives = 27/29 (93%)
Frame = +1
Query: 1 ADQTERSFQKQPTVFLNRKKGIGVKRTEN 87
ADQTERSFQKQPT+FLNRKKG+GVK+ N
Sbjct: 2 ADQTERSFQKQPTIFLNRKKGLGVKKKAN 30
Score = 31.9 bits (69), Expect = 7.8
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +3
Query: 90 LRYHKDVGLGFKTPRE 137
LRY ++VGLGFKTPRE
Sbjct: 32 LRYIRNVGLGFKTPRE 47
>UniRef50_P62280 Cluster: 40S ribosomal protein S11; n=65;
Eukaryota|Rep: 40S ribosomal protein S11 - Homo sapiens
(Human)
Length = 158
Score = 115 bits (276), Expect = 6e-25
Identities = 50/57 (87%), Positives = 54/57 (94%)
Frame = +2
Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
RRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+ DIVT+GECRPLSKTVRFNVLKV
Sbjct: 89 RRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKV 145
Score = 107 bits (256), Expect = 2e-22
Identities = 48/54 (88%), Positives = 53/54 (98%)
Frame = +3
Query: 93 RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
RY+K++GLGFKTP+EAIEGTYIDKKCPFTGNVSIRGRIL+GVV KMKMQRTIVI
Sbjct: 35 RYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVI 88
Score = 33.5 bits (73), Expect = 2.6
Identities = 12/18 (66%), Positives = 17/18 (94%)
Frame = +1
Query: 7 QTERSFQKQPTVFLNRKK 60
QTER++QKQPT+F N+K+
Sbjct: 5 QTERAYQKQPTIFQNKKR 22
>UniRef50_A0BVQ1 Cluster: Chromosome undetermined scaffold_130,
whole genome shotgun sequence; n=18; Eukaryota|Rep:
Chromosome undetermined scaffold_130, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 188
Score = 96.3 bits (229), Expect = 3e-19
Identities = 42/57 (73%), Positives = 48/57 (84%)
Frame = +2
Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
RRDYLHY+ KYNR+EKRHRN+ VH+SP F V+ DIV G+CRPLSKTVRFNVLKV
Sbjct: 116 RRDYLHYVAKYNRYEKRHRNVPVHISPAFGPVKEGDIVVCGQCRPLSKTVRFNVLKV 172
Score = 90.6 bits (215), Expect = 2e-17
Identities = 40/57 (70%), Positives = 47/57 (82%)
Frame = +3
Query: 84 KPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
K +RY K+VGLGFK P++AIEG YIDKKCPFTGNVS+RG IL G+V KM RTI+I
Sbjct: 59 KGVRYWKEVGLGFKVPKDAIEGNYIDKKCPFTGNVSVRGAILKGIVISTKMTRTIII 115
>UniRef50_P26781 Cluster: 40S ribosomal protein S11; n=73;
Eukaryota|Rep: 40S ribosomal protein S11 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 156
Score = 95.9 bits (228), Expect = 4e-19
Identities = 41/57 (71%), Positives = 51/57 (89%)
Frame = +2
Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
RR YLHY+PKYNR+EKRH+N+ VH+SP FR V+ DIVT+G+CRP+SKTVRFNV+KV
Sbjct: 87 RRAYLHYIPKYNRYEKRHKNVPVHVSPAFR-VQVGDIVTVGQCRPISKTVRFNVVKV 142
Score = 89.0 bits (211), Expect = 5e-17
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = +3
Query: 72 EADRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIV 251
+ ++ R++K+ GLGFKTP+ AIEG+YIDKKCPFTG VSIRG+ILTG V KM RTIV
Sbjct: 26 KTSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIV 85
Query: 252 I 254
I
Sbjct: 86 I 86
>UniRef50_P79013 Cluster: 40S ribosomal protein S11; n=2;
Dikarya|Rep: 40S ribosomal protein S11 -
Schizosaccharomyces pombe (Fission yeast)
Length = 152
Score = 94.7 bits (225), Expect = 1e-18
Identities = 38/57 (66%), Positives = 51/57 (89%)
Frame = +2
Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
RR+YLH++PKYNR+EKRH+N++ H+SP FR + D+VT+G+CRPLSKTVRFNVL+V
Sbjct: 84 RREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139
Score = 89.0 bits (211), Expect = 5e-17
Identities = 40/54 (74%), Positives = 44/54 (81%)
Frame = +3
Query: 93 RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
R++KDVGLGFKTP EAI G Y+DKKCPF G VSIRGRILTG V KM RTI+I
Sbjct: 30 RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIII 83
Score = 34.7 bits (76), Expect = 1.1
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +1
Query: 7 QTERSFQKQPTVFLNRKKGIG 69
Q+ER+FQKQP +F N KKG G
Sbjct: 8 QSERAFQKQPHIFQNAKKGAG 28
>UniRef50_Q15GB4 Cluster: 60S ribosomal protein 11; n=1; Rhodomonas
salina|Rep: 60S ribosomal protein 11 - Rhodomonas salina
(Cryptomonas salina)
Length = 145
Score = 93.1 bits (221), Expect = 3e-18
Identities = 39/57 (68%), Positives = 49/57 (85%)
Frame = +2
Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
RRDYLH++ KY RFEKRH+N+ H SPCFR V+ D+VTIG+CRPLSKT+RFNVL++
Sbjct: 76 RRDYLHWISKYKRFEKRHKNIPCHCSPCFR-VQEGDLVTIGQCRPLSKTIRFNVLRI 131
Score = 68.9 bits (161), Expect = 6e-11
Identities = 30/58 (51%), Positives = 39/58 (67%)
Frame = +3
Query: 81 RKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
+K K++G+G K P EAI Y DKKCPF G +SIRGRIL G V KM+R+++I
Sbjct: 18 KKKKNSFKNIGMGLKAPLEAINNNYFDKKCPFRGLISIRGRILRGTVISTKMKRSVII 75
>UniRef50_Q7XLC9 Cluster: OSJNBa0070C17.20 protein; n=11;
Eukaryota|Rep: OSJNBa0070C17.20 protein - Oryza sativa
subsp. japonica (Rice)
Length = 185
Score = 90.6 bits (215), Expect = 2e-17
Identities = 39/54 (72%), Positives = 44/54 (81%)
Frame = +3
Query: 93 RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
R+ K +GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G KM RTI++
Sbjct: 34 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIV 87
Score = 68.9 bits (161), Expect = 6e-11
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +2
Query: 290 RFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
R+EKRH N+ H+SPCFR V+ D V IG+CRPLSKTVRFNVLKV
Sbjct: 124 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 167
Score = 31.9 bits (69), Expect = 7.8
Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = +1
Query: 1 ADQTERSFQKQPTVFLNRKK-GIGVK 75
A+QTE++F KQP VFL+ KK G G K
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKK 27
>UniRef50_Q9U9A0 Cluster: Putative ribosomal protein S11; n=8;
Eukaryota|Rep: Putative ribosomal protein S11 - Physarum
polycephalum (Slime mold)
Length = 158
Score = 89.8 bits (213), Expect = 3e-17
Identities = 41/57 (71%), Positives = 46/57 (80%)
Frame = +2
Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
RR+YLHY+ KY R+EKRH N SVH SP DV+ D VT+GECRPLSKTVRFNVLKV
Sbjct: 90 RRNYLHYIQKYKRYEKRHTNFSVHCSPAL-DVKEGDTVTVGECRPLSKTVRFNVLKV 145
Score = 82.6 bits (195), Expect = 4e-15
Identities = 37/55 (67%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
Frame = +3
Query: 93 RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKM-KMQRTIVI 254
RY + VGLG+KTP+ A+EGT++D KCPFTGNVSIRGRIL GVV KM+RT+V+
Sbjct: 35 RYVRQVGLGYKTPKAALEGTFVDDKCPFTGNVSIRGRILRGVVVSAGKMKRTVVV 89
>UniRef50_Q42068 Cluster: Ribosomal protein 40S-S11; n=1;
Arabidopsis thaliana|Rep: Ribosomal protein 40S-S11 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 103
Score = 85.0 bits (201), Expect = 8e-16
Identities = 36/55 (65%), Positives = 46/55 (83%)
Frame = +3
Query: 93 RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIA 257
R+ K++GLGFKTPREAI+G Y+DKKCPFTG VSIRGRIL + + +MQ TI++A
Sbjct: 42 RFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILVWYLPQCEMQSTIIVA 96
>UniRef50_Q4QCN7 Cluster: Ribosomal protein s11 homolog; n=16;
Eukaryota|Rep: Ribosomal protein s11 homolog -
Leishmania major
Length = 141
Score = 84.6 bits (200), Expect = 1e-15
Identities = 37/55 (67%), Positives = 43/55 (78%)
Frame = +3
Query: 90 LRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
+RY K +GLGFKTP +A+ G YID+KCPFT NV IRGRIL GVV KM RTI+I
Sbjct: 15 IRYSKKIGLGFKTPAKALNGKYIDRKCPFTSNVVIRGRILRGVVHSTKMHRTIII 69
Score = 79.0 bits (186), Expect = 5e-14
Identities = 33/57 (57%), Positives = 47/57 (82%)
Frame = +2
Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
RR+YLH++ KY R++KRH++++VH SP F D + D V IG+CRPLSKT+R+NVL+V
Sbjct: 70 RRNYLHFIKKYQRYQKRHKSLAVHCSPAF-DPKQGDEVVIGQCRPLSKTIRYNVLEV 125
>UniRef50_Q3LW88 Cluster: Ribosomal protein S11; n=1; Bigelowiella
natans|Rep: Ribosomal protein S11 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 119
Score = 72.1 bits (169), Expect = 6e-12
Identities = 35/57 (61%), Positives = 41/57 (71%)
Frame = +2
Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
R DYL +L KYNRF KRH+N+ HLS + DIV I ECRP+SKTVRFNV+KV
Sbjct: 56 RIDYLKFLKKYNRFVKRHKNIPAHLSNLLT-CKVGDIVIIAECRPISKTVRFNVIKV 111
Score = 50.4 bits (115), Expect = 2e-05
Identities = 20/33 (60%), Positives = 28/33 (84%)
Frame = +3
Query: 156 IDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
IDKKCPF G +++RGRIL G V+K+KM+ T++I
Sbjct: 23 IDKKCPFYGKINLRGRILRGKVRKIKMKSTVII 55
>UniRef50_Q8SS53 Cluster: 40S RIBOSOMAL PROTEIN S11; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S11
- Encephalitozoon cuniculi
Length = 156
Score = 69.3 bits (162), Expect = 4e-11
Identities = 35/81 (43%), Positives = 51/81 (62%)
Frame = +3
Query: 18 LIPKTTYSLSEPQERYWCEADRKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 197
+ P+ T ++P Y ++ R + +V GFK P A YIDKKCPFTG+V++R
Sbjct: 9 VFPRQTGVCAKP---YASHEEQPKRRVNAEV-CGFKAPETAYTRQYIDKKCPFTGDVNVR 64
Query: 198 GRILTGVVQKMKMQRTIVIAA 260
GR+ GVV+KMK ++TIV+ A
Sbjct: 65 GRLFKGVVKKMKAEKTIVVVA 85
Score = 60.1 bits (139), Expect = 3e-08
Identities = 26/48 (54%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +2
Query: 260 DYLHYLPKYNRFEKRHRNMSVHLSPCFRD-VEXCDIVTIGECRPLSKT 400
+Y+HY KY R+ +RH N SVH+SPCF + D V GE RPLSKT
Sbjct: 86 NYVHYSKKYKRYSRRHTNFSVHMSPCFEGMINVGDTVICGETRPLSKT 133
>UniRef50_Q2QAS1 Cluster: Ribosomal protein S17; n=2; environmental
samples|Rep: Ribosomal protein S17 - uncultured marine
group II euryarchaeote HF70_59C08
Length = 111
Score = 60.5 bits (140), Expect = 2e-08
Identities = 26/55 (47%), Positives = 36/55 (65%)
Frame = +2
Query: 257 RDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLK 421
R+++ Y+ K+ R+EKR R + HL C DV D V I ECRPLSKT+ F V++
Sbjct: 52 REHIRYMQKFERYEKRTRRYAAHLPSCIGDVNVGDSVRIMECRPLSKTITFCVIE 106
Score = 40.3 bits (90), Expect = 0.022
Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +3
Query: 102 KDVGLGFKT-PREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
+D+G+ P+ +G D+ CPF G++ +RG+I+ G + K+ MQ++I++
Sbjct: 2 RDIGIELNNQPKGEWDG---DENCPFYGSLRLRGQIIEGTIAKVGMQKSIIV 50
>UniRef50_UPI0000D9F1CD Cluster: PREDICTED: similar to ribosomal
protein S11; n=1; Macaca mulatta|Rep: PREDICTED: similar
to ribosomal protein S11 - Macaca mulatta
Length = 84
Score = 59.7 bits (138), Expect = 3e-08
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +2
Query: 311 NMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
NMS+H S CFRDV IVT+GEC+PLSKTVRF + KV
Sbjct: 34 NMSIHFSTCFRDVHIGHIVTVGECQPLSKTVRFIMFKV 71
>UniRef50_Q9YF81 Cluster: 30S ribosomal protein S17P; n=4;
Thermoprotei|Rep: 30S ribosomal protein S17P - Aeropyrum
pernix
Length = 114
Score = 58.0 bits (134), Expect = 1e-07
Identities = 27/54 (50%), Positives = 36/54 (66%)
Frame = +2
Query: 263 YLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
YL+Y KYNR+E+R + + HL C V+ D+V IGE P+SKTV+F VL V
Sbjct: 59 YLYYDKKYNRYERRSKKIHAHLPDCI-SVKEGDVVVIGETMPISKTVKFTVLGV 111
Score = 34.3 bits (75), Expect = 1.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 159 DKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
D CP+ G + +RG +L GVV K + +R +V+
Sbjct: 24 DPNCPWHGTLRVRGVLLEGVVAKARARRMVVV 55
>UniRef50_A3H7C0 Cluster: Ribosomal protein S17; n=4;
Thermoprotei|Rep: Ribosomal protein S17 - Caldivirga
maquilingensis IC-167
Length = 152
Score = 55.2 bits (127), Expect = 7e-07
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +2
Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVL 418
+ ++LHY PKY R+ ++ RN+ HL C + V D V IGE RPL+K + F VL
Sbjct: 79 QHEWLHYSPKYKRYIRKRRNIHAHLPSCIK-VNVGDYVVIGETRPLAKFISFVVL 132
Score = 32.7 bits (71), Expect = 4.5
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +3
Query: 102 KDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIV 251
+ +G+ + P +A+ D KCP+ G+V +RG IL G V + M + ++
Sbjct: 32 RHIGVPWLLPPKAVCN---DDKCPWHGHVKVRGTILEGRVVSVYMGQVVI 78
>UniRef50_Q74NJ4 Cluster: 30S ribosomal protein S17P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S17P -
Nanoarchaeum equitans
Length = 113
Score = 54.8 bits (126), Expect = 1e-06
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +2
Query: 269 HYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVL 418
++LPKY R+E R ++ +L C +D++ D V IGE RPLSKT F VL
Sbjct: 53 YWLPKYERYELRRTRITAYLPECLKDIKEGDYVLIGETRPLSKTKHFVVL 102
Score = 32.7 bits (71), Expect = 4.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 159 DKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIAAITFTTYP 281
DKKCP G++ +RG G V K +T+ I I + P
Sbjct: 16 DKKCPHHGHLKVRGFFFKGKVIKKSDNKTVKIEIIRYYWLP 56
>UniRef50_Q8ZWL3 Cluster: 30S ribosomal protein S17P; n=3;
Pyrobaculum|Rep: 30S ribosomal protein S17P -
Pyrobaculum aerophilum
Length = 123
Score = 52.8 bits (121), Expect = 4e-06
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +2
Query: 260 DYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVL 418
++LHY+ KYNR+E+R + M V + C +V+ D V I E RPLSKT+ + V+
Sbjct: 54 EWLHYIRKYNRYERRRKRMRVRVPECI-EVKPGDKVIIAETRPLSKTIAWVVI 105
>UniRef50_Q8TW21 Cluster: 30S ribosomal protein S17P; n=24;
Archaea|Rep: 30S ribosomal protein S17P - Methanopyrus
kandleri
Length = 118
Score = 52.8 bits (121), Expect = 4e-06
Identities = 26/56 (46%), Positives = 33/56 (58%)
Frame = +2
Query: 257 RDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
R+Y Y KY R+E+R + H PC D + D V I ECRPLSKT F V++V
Sbjct: 57 REYYRYDRKYERWERRRSRIPAHNPPCI-DAQEGDKVRIAECRPLSKTKSFVVIEV 111
Score = 52.0 bits (119), Expect = 7e-06
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = +3
Query: 93 RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
R KD+GLG K PR + D CPF GN+ +RG IL GVV +M +T+++
Sbjct: 6 RMAKDIGLGVKPPRRECD----DPNCPFHGNLRVRGMILEGVVVSDRMDKTVIV 55
>UniRef50_Q8PV41 Cluster: 30S ribosomal protein S17P; n=5;
Methanomicrobia|Rep: 30S ribosomal protein S17P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 109
Score = 50.8 bits (116), Expect = 2e-05
Identities = 25/55 (45%), Positives = 32/55 (58%)
Frame = +2
Query: 257 RDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLK 421
R Y+ + KY R+EKR + H C + DIVTI ECRP+SKT F V+K
Sbjct: 51 RQYMKMVSKYQRYEKRRSKIHAHNPACI-SAKVGDIVTIVECRPISKTKSFVVVK 104
Score = 45.2 bits (102), Expect = 8e-04
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +3
Query: 102 KDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
+D+GL P E + Y CPF G + +RG+IL G V KM T+VI
Sbjct: 3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVI 49
>UniRef50_P12741 Cluster: 30S ribosomal protein S17P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S17P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 112
Score = 48.8 bits (111), Expect = 6e-05
Identities = 24/48 (50%), Positives = 29/48 (60%)
Frame = +2
Query: 257 RDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKT 400
R+Y +PKY+RF KR + H C D+ D VTI ECRPLSKT
Sbjct: 49 REYDVKVPKYDRFMKRRSRVPAHAPDCL-DLAVGDTVTIAECRPLSKT 95
Score = 41.1 bits (92), Expect = 0.013
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 108 VGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
+GL + P E T D+ CPF G +S+RG+ L G V M++T+V+
Sbjct: 3 LGLNVQEPEE----TCADQNCPFHGELSVRGQTLNGEVASTDMEKTVVV 47
>UniRef50_A1RXG3 Cluster: Ribosomal protein S17; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein S17 - Thermofilum
pendens (strain Hrk 5)
Length = 111
Score = 45.6 bits (103), Expect = 6e-04
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2
Query: 260 DYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVL 418
+YL+Y KY R+E R + V + PC V+ D V + E RPL+K+V F V+
Sbjct: 55 EYLYYNEKYKRYEVRRKKKHVRVPPCI-PVKPGDEVIVAETRPLAKSVSFVVI 106
>UniRef50_Q9HIR8 Cluster: 30S ribosomal protein S17P; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S17P -
Thermoplasma acidophilum
Length = 109
Score = 44.8 bits (101), Expect = 0.001
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +2
Query: 257 RDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLK 421
R+Y Y+PKY R + + VH+ C + ++ D V ECR L+KT+ F +++
Sbjct: 52 REYQQYIPKYERKATKIKKYHVHVPDCIK-IKPGDTVRFAECRKLAKTISFVIVE 105
Score = 41.5 bits (93), Expect = 0.010
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +3
Query: 96 YHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIA 257
Y +++GL K P E D CP+ G +S+RG++LTG V M ++ V+A
Sbjct: 2 YTRNIGLDVKLP----ESECNDPHCPYHGKLSVRGQVLTGKVVSANMTKSAVVA 51
>UniRef50_Q8TP90 Cluster: Putative 30S ribosomal protein S17P-like;
n=1; Methanosarcina acetivorans|Rep: Putative 30S
ribosomal protein S17P-like - Methanosarcina acetivorans
Length = 486
Score = 42.3 bits (95), Expect = 0.006
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 102 KDVGL-GFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
+D+G+ G K P E D +CPF G +S+RG+IL G+V KM + IV+
Sbjct: 2 RDIGINGIKLPTEDCN----DPECPFHGKLSVRGQILKGIVISDKMTKNIVM 49
Score = 36.7 bits (81), Expect = 0.27
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +2
Query: 239 ENYRDRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVL 418
+ YR++ Y KY R ++ + + PC + + DI+TI ECRPL+K F V+
Sbjct: 50 KRYREKWSY-----KYQRKQRVSSKIHAYSPPCM-EAKIGDIITIAECRPLNKGSSFVVI 103
Query: 419 K 421
+
Sbjct: 104 E 104
>UniRef50_A0RVY2 Cluster: Ribosomal protein S17; n=2;
Thermoprotei|Rep: Ribosomal protein S17 - Cenarchaeum
symbiosum
Length = 109
Score = 38.7 bits (86), Expect = 0.068
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 102 KDVGLGFKTP-REAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
+++GL P REA +G DK PF G + IRG++ G + K + T+VI
Sbjct: 3 REIGLPVPAPSREAADG---DKNNPFNGTLPIRGKLFEGTIVSAKARSTVVI 51
Score = 35.9 bits (79), Expect = 0.48
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 272 YLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
Y K+ R+ + + H+ P DV D V ECRP++K+V F V++V
Sbjct: 58 YFTKFKRYARGRSRIHAHV-PSNIDVREGDRVLAAECRPVAKSVSFVVVEV 107
>UniRef50_A7BRH2 Cluster: Ribosomal protein S17; n=1; Beggiatoa sp.
PS|Rep: Ribosomal protein S17 - Beggiatoa sp. PS
Length = 100
Score = 35.1 bits (77), Expect = 0.84
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 278 PKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKT 400
PKY ++ KR + VH + DIV I +CRP+SKT
Sbjct: 47 PKYGKYIKRSTKLHVHDEE--NTCQVGDIVAISQCRPISKT 85
>UniRef50_A1UB26 Cluster: Putative uncharacterized protein; n=3;
Mycobacterium|Rep: Putative uncharacterized protein -
Mycobacterium sp. (strain KMS)
Length = 2125
Score = 34.7 bits (76), Expect = 1.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 87 PLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGN 185
P Y +D G GF PRE GT++ +CP G+
Sbjct: 2015 PAEYKRDDGEGFYWPREIDPGTWLSVRCPVEGS 2047
>UniRef50_Q7M8E2 Cluster: 30S ribosomal protein S17; n=11;
Epsilonproteobacteria|Rep: 30S ribosomal protein S17 -
Wolinella succinogenes
Length = 88
Score = 33.5 bits (73), Expect = 2.6
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +2
Query: 278 PKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
PKY + KR + VH V+ D++ ECRPLSK F++ KV
Sbjct: 35 PKYRKIVKRFKKYIVHDES--NAVKVGDMIEAIECRPLSKRKSFSLHKV 81
>UniRef50_P38519 Cluster: 30S ribosomal protein S17; n=7;
Bacteria|Rep: 30S ribosomal protein S17 - Thermotoga
maritima
Length = 107
Score = 33.1 bits (72), Expect = 3.4
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 278 PKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
P Y ++ KR + H + + D+V I E RPLSKT R+ V+++
Sbjct: 30 PLYKKYVKRTKKYHAHDER--NECKIGDVVEIEETRPLSKTKRWRVVRI 76
>UniRef50_Q1RLD3 Cluster: Zinc finger protein; n=1; Ciona
intestinalis|Rep: Zinc finger protein - Ciona
intestinalis (Transparent sea squirt)
Length = 1534
Score = 32.7 bits (71), Expect = 4.5
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Frame = +2
Query: 20 HSKNNLQSF*TARKVLV*SGQKTVEIPQGCGPRFQDSP*GD*GYLH*QEVSLHWQRFDXX 199
H NN + R V SG+KTVE+ G +F DS + + + ++ D
Sbjct: 500 HDTNNEAGYIHIRSVY--SGEKTVEVKPGMKSKFVDSKEMPETFPYKAKAFFAFEEIDGV 557
Query: 200 XXXXXXXSEDE---DAENYRDRRDYLHYLPKYNRFEKRHRNMSVH 325
E DA RR YL YL + F RH +V+
Sbjct: 558 DICFFGVHVQEYGSDAPIPNQRRVYLSYLDSVHFFRPRHLRTAVY 602
>UniRef50_Q601K5 Cluster: 30S ribosomal protein S17; n=4; Mycoplasma
hyopneumoniae|Rep: 30S ribosomal protein S17 -
Mycoplasma hyopneumoniae (strain 232)
Length = 98
Score = 32.3 bits (70), Expect = 5.9
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 290 RFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
RF+KR + + H +V D V I ECRP+SKT F +++V
Sbjct: 50 RFKKR-KKFNTHDEKNLAEVG--DFVKIAECRPISKTKHFRLVEV 91
>UniRef50_UPI000156174A Cluster: PREDICTED: similar to NBPF5
protein, partial; n=2; Equus caballus|Rep: PREDICTED:
similar to NBPF5 protein, partial - Equus caballus
Length = 736
Score = 31.9 bits (69), Expect = 7.8
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -2
Query: 174 RDTSCQCRYPQSPHGES*NRGPHPCGISTVFCPLHTNTFLAVQKDCRLFL 25
R +S YP+ PH + RG H C CP+ T A+ + R F+
Sbjct: 374 RGSSASADYPRFPHARNRQRGTHVC-----LCPVAVPTVAAISRPRRSFV 418
Score = 31.9 bits (69), Expect = 7.8
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -2
Query: 174 RDTSCQCRYPQSPHGES*NRGPHPCGISTVFCPLHTNTFLAVQKDCRLFL 25
R +S YP+ PH + RG H C CP+ T A+ + R F+
Sbjct: 556 RGSSASADYPRFPHARNRQRGTHVC-----LCPVAVPTVAAISRPRRSFV 600
>UniRef50_A4M9T1 Cluster: 30S ribosomal protein S17; n=2;
Bacteria|Rep: 30S ribosomal protein S17 - Petrotoga
mobilis SJ95
Length = 110
Score = 31.9 bits (69), Expect = 7.8
Identities = 23/54 (42%), Positives = 28/54 (51%)
Frame = +2
Query: 260 DYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLK 421
D L PKY++F ++ R H + E DIV I E R LSKT F VLK
Sbjct: 24 DRLTKHPKYHKFVRKTRRYHAHDEN--NECEIGDIVEIEESRKLSKTKAF-VLK 74
>UniRef50_A0TER1 Cluster: Putative uncharacterized protein
precursor; n=1; Burkholderia ambifaria MC40-6|Rep:
Putative uncharacterized protein precursor -
Burkholderia ambifaria MC40-6
Length = 497
Score = 31.9 bits (69), Expect = 7.8
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 179 WQRFDXXXXXXXXXSEDEDAENYRDRRDYLHYLPKYNRFEKRHRNMSVHLS 331
W+ D D D +RDR LH L + +R E HRN +HL+
Sbjct: 53 WEAHDAEKECCSRLDPDRDGGGHRDR---LHDLYELSRQESHHRNRRLHLA 100
>UniRef50_A7NUP3 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=5; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 910
Score = 31.9 bits (69), Expect = 7.8
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 150 TYID-KKCPFTGNVSIRGRILTGVVQKMKMQRTIVIAAITFTTYPNTI 290
T++D KK P+ G ++ R+L ++ K K R + + A T P++I
Sbjct: 570 TFLDEKKYPYFGFYTLSKRVLQNILPKFKSLRVLSLCAYKITEVPDSI 617
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 434,725,315
Number of Sequences: 1657284
Number of extensions: 8115388
Number of successful extensions: 20214
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 19677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20195
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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