Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40299
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    95   7e-21
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    95   7e-21
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    30   0.21 
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    28   0.85 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   2.6  
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    26   3.4  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   4.5  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   7.9  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   7.9  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   7.9  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 94.7 bits (225), Expect = 7e-21
 Identities = 38/57 (66%), Positives = 51/57 (89%)
 Frame = +2

Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
           RR+YLH++PKYNR+EKRH+N++ H+SP FR +   D+VT+G+CRPLSKTVRFNVL+V
Sbjct: 84  RREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139



 Score = 89.0 bits (211), Expect = 3e-19
 Identities = 40/54 (74%), Positives = 44/54 (81%)
 Frame = +3

Query: 93  RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
           R++KDVGLGFKTP EAI G Y+DKKCPF G VSIRGRILTG V   KM RTI+I
Sbjct: 30  RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIII 83



 Score = 34.7 bits (76), Expect = 0.007
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +1

Query: 7  QTERSFQKQPTVFLNRKKGIG 69
          Q+ER+FQKQP +F N KKG G
Sbjct: 8  QSERAFQKQPHIFQNAKKGAG 28


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 94.7 bits (225), Expect = 7e-21
 Identities = 38/57 (66%), Positives = 51/57 (89%)
 Frame = +2

Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
           RR+YLH++PKYNR+EKRH+N++ H+SP FR +   D+VT+G+CRPLSKTVRFNVL+V
Sbjct: 84  RREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139



 Score = 89.0 bits (211), Expect = 3e-19
 Identities = 40/54 (74%), Positives = 44/54 (81%)
 Frame = +3

Query: 93  RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
           R++KDVGLGFKTP EAI G Y+DKKCPF G VSIRGRILTG V   KM RTI+I
Sbjct: 30  RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRTIII 83



 Score = 34.7 bits (76), Expect = 0.007
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +1

Query: 7  QTERSFQKQPTVFLNRKKGIG 69
          Q+ER+FQKQP +F N KKG G
Sbjct: 8  QSERAFQKQPHIFQNAKKGAG 28


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 29.9 bits (64), Expect = 0.21
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 359 DIVTIGECRPLSKTVRFNVLKV 424
           D VTI  CRP S T RF ++K+
Sbjct: 53  DAVTIQPCRPRSATKRFEIIKI 74


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.9 bits (59), Expect = 0.85
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 124 LKPRPTSLWYLNGFLSASHQYLSCGSE 44
           L P+PT+ W  NGF S +   L+ G E
Sbjct: 187 LPPKPTTPWRRNGFRSKTTPNLNSGKE 213


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 278 PKYNRFEKRHRNMSVHLSPCFRDVEXCDIVT 370
           PKYN + ++   ++  +   F D E C++ T
Sbjct: 153 PKYNSYLRQRSRLAYQVHSFFNDREFCEVET 183


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 194 DRNVASEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSVRFTPI 63
           D    S  TLLV     N+ TG++ET   I ++  RF +   P+
Sbjct: 81  DPEELSRKTLLVK----NKKTGAIETAPSIPLLGVRFDIMLNPV 120


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 127 VLKPRPTSLWYLNGFLSASHQYLSCGS 47
           +L+  P  L YLN FL +S++YL   S
Sbjct: 84  ILRDYPDLLEYLNIFLPSSYKYLLSNS 110


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 71  TPIPFLRFRKTVGCFWNER 15
           T   F++ R TV CFW E+
Sbjct: 290 TVFSFVQVRGTVPCFWEEQ 308


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 239 ENYRDRRDYLHYLPKYNRFEKR 304
           E ++ + DY  +LPK   FEK+
Sbjct: 142 ELFQSQNDYSRFLPKRKDFEKK 163


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +2

Query: 221 SEDEDAENYRDRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKT 400
           +EDE  +  R RR  L  L KY +    H ++S+       DV+        E  P  KT
Sbjct: 7   AEDEIIQQRRKRR--LEILKKYQQTGNGHSDLSIPEKKLKEDVDQVSTTKPIEAVPKMKT 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,762
Number of Sequences: 5004
Number of extensions: 33933
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)