Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40299
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 91 4e-19
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 91 4e-19
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 91 6e-19
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 91 6e-19
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 91 6e-19
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 91 6e-19
02_02_0480 + 10799242-10799365,10799748-10800044,10800081-108002... 28 3.4
08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526... 28 4.5
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 27 6.0
04_04_0496 + 25631832-25631972,25632094-25632160,25634993-256350... 27 7.9
02_04_0058 - 19329380-19330498,19330941-19330988,19331797-19332174 27 7.9
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 91.1 bits (216), Expect = 4e-19
Identities = 39/54 (72%), Positives = 45/54 (83%)
Frame = +3
Query: 93 RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
R+ K++GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G KM RTI++
Sbjct: 25 RFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIV 78
Score = 86.6 bits (205), Expect = 9e-18
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = +2
Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
RR+YLH++ KY R+EKRH N+ H+SPCFR V+ D V IG+CRPLSKTVRFNV+KV
Sbjct: 79 RRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVIKV 134
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 91.1 bits (216), Expect = 4e-19
Identities = 39/54 (72%), Positives = 45/54 (83%)
Frame = +3
Query: 93 RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
R+ K++GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G KM RTI++
Sbjct: 34 RFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIV 87
Score = 78.2 bits (184), Expect = 3e-15
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 7/64 (10%)
Frame = +2
Query: 254 RRDYLHYLPKYNR-------FEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFN 412
RR+YLH++ KY R +EKRH N+ H+SPCFR V+ D V IG+CRPLSKTVRFN
Sbjct: 88 RRNYLHFVKKYQRQVNLVAGYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFN 146
Query: 413 VLKV 424
VLKV
Sbjct: 147 VLKV 150
Score = 30.7 bits (66), Expect = 0.64
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +1
Query: 1 ADQTERSFQKQPTVFLNRKK 60
A+QTER+F KQP VFL KK
Sbjct: 2 AEQTERAFLKQPKVFLCPKK 21
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 90.6 bits (215), Expect = 6e-19
Identities = 39/54 (72%), Positives = 44/54 (81%)
Frame = +3
Query: 93 RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
R+ K +GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G KM RTI++
Sbjct: 34 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIV 87
Score = 76.2 bits (179), Expect = 1e-14
Identities = 39/66 (59%), Positives = 47/66 (71%), Gaps = 9/66 (13%)
Frame = +2
Query: 254 RRDYLHYLPKYNR---------FEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVR 406
RR+YLH++ KY R +EKRH N+ H+SPCFR V+ D V IG+CRPLSKTVR
Sbjct: 88 RRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVR 146
Query: 407 FNVLKV 424
FNVLKV
Sbjct: 147 FNVLKV 152
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = +1
Query: 1 ADQTERSFQKQPTVFLNRKK-GIGVK 75
A+QTE++F KQP VFL+ KK G G K
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKK 27
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 90.6 bits (215), Expect = 6e-19
Identities = 39/54 (72%), Positives = 44/54 (81%)
Frame = +3
Query: 93 RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
R+ K +GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G KM RTI++
Sbjct: 34 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIV 87
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = +1
Query: 1 ADQTERSFQKQPTVFLNRKK-GIGVK 75
A+QTE++F KQP VFL+ KK G G K
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKK 27
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 90.6 bits (215), Expect = 6e-19
Identities = 39/54 (72%), Positives = 44/54 (81%)
Frame = +3
Query: 93 RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
R+ K +GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G KM RTI++
Sbjct: 34 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIV 87
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +2
Query: 290 RFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
R+EKRH N+ H+SPCFR V+ D V IG+CRPLSKTVRFNVLKV
Sbjct: 124 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 167
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = +1
Query: 1 ADQTERSFQKQPTVFLNRKK-GIGVK 75
A+QTE++F KQP VFL+ KK G G K
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKK 27
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 90.6 bits (215), Expect = 6e-19
Identities = 39/54 (72%), Positives = 44/54 (81%)
Frame = +3
Query: 93 RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
R+ K +GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G KM RTI++
Sbjct: 34 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIV 87
Score = 76.2 bits (179), Expect = 1e-14
Identities = 39/66 (59%), Positives = 47/66 (71%), Gaps = 9/66 (13%)
Frame = +2
Query: 254 RRDYLHYLPKYNR---------FEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVR 406
RR+YLH++ KY R +EKRH N+ H+SPCFR V+ D V IG+CRPLSKTVR
Sbjct: 88 RRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVR 146
Query: 407 FNVLKV 424
FNVLKV
Sbjct: 147 FNVLKV 152
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = +1
Query: 1 ADQTERSFQKQPTVFLNRKK-GIGVK 75
A+QTE++F KQP VFL+ KK G G K
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKK 27
>02_02_0480 +
10799242-10799365,10799748-10800044,10800081-10800248,
10800525-10800805,10800860-10801205,10801425-10801428,
10801533-10801575
Length = 420
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 182 ASEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSVRFTPIPFL 54
+S T+ + LNR TG+LE+E V + +T +P L
Sbjct: 322 SSGNTIFASCKPLNRCTGALESELRACVEGLNLVLHWTLLPIL 364
>08_01_1013 +
10251463-10251858,10252366-10252434,10252545-10252652,
10253261-10253326,10254258-10254395,10255047-10255094,
10256292-10256398,10257228-10257302,10258317-10258368,
10258485-10259068,10259944-10260150,10260236-10260407
Length = 673
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2
Query: 224 EDEDAENYRDRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTV 403
E ED E+Y R +++ PK + M L PC+R E +I +PLS V
Sbjct: 106 EVEDEEDYVLREIDVYFTPKPFDEDTMLYVMQYPLRPCWRPYELNEICKEVRVKPLSSKV 165
Query: 404 RFNV 415
++
Sbjct: 166 EVDL 169
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 224 EDEDAENYRDRRDYLHYLPKYNRFEKRHRNMS 319
+ EDAE Y +R L Y P+Y ++K +S
Sbjct: 85 KSEDAEPYPTQRGLLQYPPQYPAYDKYMTQLS 116
>04_04_0496 +
25631832-25631972,25632094-25632160,25634993-25635054,
25636173-25636248,25636355-25636429,25637768-25637825,
25637955-25638207,25639030-25639037,25639159-25639411,
25639503-25639605,25639750-25639852,25639947-25640160
Length = 470
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -1
Query: 391 QRSAFADRYNITXLHVPEARRQMYGHVPVPFLEPIVFG 278
+R +A +NI H + P FL+PI FG
Sbjct: 218 RREPYAAAHNILLSHAAAVHNYKTNYQPCRFLDPIFFG 255
>02_04_0058 - 19329380-19330498,19330941-19330988,19331797-19332174
Length = 514
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 35 LQSF*TARKVLV*SGQKTVEIPQGCGPRFQD 127
+Q F T ++ + SG + +EIP GPR QD
Sbjct: 354 VQGFDTQEELELGSGVELLEIPPASGPRGQD 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,753,273
Number of Sequences: 37544
Number of extensions: 227231
Number of successful extensions: 518
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -