BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV40299 (484 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 2e-23 SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06) 32 0.28 SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31) 27 6.1 SB_35821| Best HMM Match : TUDOR (HMM E-Value=0) 27 6.1 SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1 SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1 >SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 171 Score = 105 bits (252), Expect = 2e-23 Identities = 42/57 (73%), Positives = 51/57 (89%) Frame = +2 Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424 RRDYLHY+ KYNRFEKRH+N++ H SPCFRD+ D++T+G+CRPLSKTVRFNVLKV Sbjct: 99 RRDYLHYIKKYNRFEKRHKNLAAHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155 Score = 90.6 bits (215), Expect = 6e-19 Identities = 46/70 (65%), Positives = 54/70 (77%), Gaps = 12/70 (17%) Frame = +3 Query: 81 RKPLRYHKDVGLGFKTP------------REAIEGTYIDKKCPFTGNVSIRGRILTGVVQ 224 +K LR+ ++VGLGFKTP REAIEGTYIDKKCPFTGNVSIRGRILTG+ + Sbjct: 29 KKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEGTYIDKKCPFTGNVSIRGRILTGICR 88 Query: 225 KMKMQRTIVI 254 MKM+RTI+I Sbjct: 89 SMKMKRTIII 98 Score = 33.5 bits (73), Expect = 0.093 Identities = 13/23 (56%), Positives = 19/23 (82%) Frame = +1 Query: 1 ADQTERSFQKQPTVFLNRKKGIG 69 A+QTER++QKQ +F NRK+ +G Sbjct: 2 AEQTERAYQKQAPIFQNRKRVLG 24 >SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06) Length = 73 Score = 31.9 bits (69), Expect = 0.28 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = +2 Query: 359 DIVTIGECRPLSKTVRFNVLKV 424 D+V I ECRPLSK +FNV ++ Sbjct: 30 DVVRIKECRPLSKMKKFNVEEI 51 >SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31) Length = 1399 Score = 27.5 bits (58), Expect = 6.1 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -1 Query: 148 PSIASRGVLKPRPTSLWYLNG 86 P++ +GV PRPT WY G Sbjct: 654 PTLQCKGVGDPRPTITWYRKG 674 >SB_35821| Best HMM Match : TUDOR (HMM E-Value=0) Length = 754 Score = 27.5 bits (58), Expect = 6.1 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = +3 Query: 78 DRKPLRYHKDVGLGFKTPREAIEGTYIDKK 167 D+ PL H D+ + +K P + Y+DK+ Sbjct: 278 DKVPLNSHLDIKILYKNPEFLVVDLYVDKE 307 >SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2656 Score = 27.5 bits (58), Expect = 6.1 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = +3 Query: 78 DRKPLRYHKDVGLGFKTPREAIEGTYIDKK 167 D+ PL H D+ + +K P + Y+DK+ Sbjct: 1559 DKVPLNSHLDIKILYKNPEFLVVDLYVDKE 1588 >SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1528 Score = 27.1 bits (57), Expect = 8.1 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -2 Query: 456 LKDFFEPLPFETFKTLNLTVLDKGLHS 376 +K+F + L FET K+L L L +G+ S Sbjct: 1349 VKEFIDTLDFETIKSLCLKSLQRGVGS 1375 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,815,394 Number of Sequences: 59808 Number of extensions: 264429 Number of successful extensions: 685 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 634 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 684 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1013948003 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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