Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40299
         (484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   2e-23
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         32   0.28 
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 27   6.1  
SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)                       27   6.1  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.1  
SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  105 bits (252), Expect = 2e-23
 Identities = 42/57 (73%), Positives = 51/57 (89%)
 Frame = +2

Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
           RRDYLHY+ KYNRFEKRH+N++ H SPCFRD+   D++T+G+CRPLSKTVRFNVLKV
Sbjct: 99  RRDYLHYIKKYNRFEKRHKNLAAHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155



 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 46/70 (65%), Positives = 54/70 (77%), Gaps = 12/70 (17%)
 Frame = +3

Query: 81  RKPLRYHKDVGLGFKTP------------REAIEGTYIDKKCPFTGNVSIRGRILTGVVQ 224
           +K LR+ ++VGLGFKTP            REAIEGTYIDKKCPFTGNVSIRGRILTG+ +
Sbjct: 29  KKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEGTYIDKKCPFTGNVSIRGRILTGICR 88

Query: 225 KMKMQRTIVI 254
            MKM+RTI+I
Sbjct: 89  SMKMKRTIII 98



 Score = 33.5 bits (73), Expect = 0.093
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +1

Query: 1  ADQTERSFQKQPTVFLNRKKGIG 69
          A+QTER++QKQ  +F NRK+ +G
Sbjct: 2  AEQTERAYQKQAPIFQNRKRVLG 24


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 359 DIVTIGECRPLSKTVRFNVLKV 424
           D+V I ECRPLSK  +FNV ++
Sbjct: 30  DVVRIKECRPLSKMKKFNVEEI 51


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 148 PSIASRGVLKPRPTSLWYLNG 86
           P++  +GV  PRPT  WY  G
Sbjct: 654 PTLQCKGVGDPRPTITWYRKG 674


>SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 754

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 78  DRKPLRYHKDVGLGFKTPREAIEGTYIDKK 167
           D+ PL  H D+ + +K P   +   Y+DK+
Sbjct: 278 DKVPLNSHLDIKILYKNPEFLVVDLYVDKE 307


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 78   DRKPLRYHKDVGLGFKTPREAIEGTYIDKK 167
            D+ PL  H D+ + +K P   +   Y+DK+
Sbjct: 1559 DKVPLNSHLDIKILYKNPEFLVVDLYVDKE 1588


>SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1528

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 456  LKDFFEPLPFETFKTLNLTVLDKGLHS 376
            +K+F + L FET K+L L  L +G+ S
Sbjct: 1349 VKEFIDTLDFETIKSLCLKSLQRGVGS 1375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,815,394
Number of Sequences: 59808
Number of extensions: 264429
Number of successful extensions: 685
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)