Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40299
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   100   1e-21
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    30   1.0  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 42/57 (73%), Positives = 48/57 (84%)
 Frame = +2

Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
           RRDYLHY+ KY R+EKRH+N+  H SP FRD+   D+VTIGECRPLSKTVRFNVLKV
Sbjct: 86  RRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPGDLVTIGECRPLSKTVRFNVLKV 142



 Score = 90.6 bits (215), Expect = 5e-19
 Identities = 41/58 (70%), Positives = 48/58 (82%)
 Frame = +3

Query: 81  RKPLRYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
           +K  RY ++VGLGFK PR+A+EGTYIDKKCP+ GNV IRG ILTGVV K KM RTIV+
Sbjct: 28  KKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWAGNVPIRGMILTGVVLKNKMTRTIVV 85



 Score = 32.3 bits (70), Expect = 0.19
 Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = +1

Query: 1  ADQTERSFQKQPTVFLNRKKGI--GVKRT 81
          ++QTER+F KQPTV LN K  I  G K+T
Sbjct: 2  SEQTERAFLKQPTVNLNNKARILAGSKKT 30


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 418 QNIESNCFGQRSAFADRYNITXLHVPEARRQMYGH 314
           +++E  CF Q   F D +N+T L + +  R MY H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,210,878
Number of Sequences: 27780
Number of extensions: 199547
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)