Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40299
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...    93   1e-19
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)            90   6e-19
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)            89   2e-18
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila...    31   0.41 
At1g52180.1 68414.m05888 major intrinsic family protein / MIP fa...    28   2.9  
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00...    28   3.8  
At5g17670.1 68418.m02071 expressed protein                             27   5.0  
At4g26980.1 68417.m03882 expressed protein                             27   5.0  
At3g59310.2 68416.m06612 expressed protein identical to anthocya...    27   5.0  
At3g54090.1 68416.m05980 pfkB-type carbohydrate kinase family pr...    27   8.8  
At2g32120.2 68415.m03926 heat shock protein 70 family protein / ...    27   8.8  
At2g32120.1 68415.m03925 heat shock protein 70 family protein / ...    27   8.8  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score = 92.7 bits (220), Expect = 1e-19
 Identities = 40/54 (74%), Positives = 47/54 (87%)
 Frame = +3

Query: 93  RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
           R+ K++GLGFKTPREAIEGTYID+KCPFTG VSIRGRIL+G     KMQRTI++
Sbjct: 34  RFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIV 87



 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 41/57 (71%), Positives = 48/57 (84%)
 Frame = +2

Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
           RRDYLH++ KY R+EKRH N+  H+SPCFR V+  D VTIG+CRPLSKTVRFNVLKV
Sbjct: 88  RRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGDRVTIGQCRPLSKTVRFNVLKV 143



 Score = 31.9 bits (69), Expect = 0.23
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +1

Query: 1  ADQTERSFQKQPTVFLNRKKGIGVKR 78
          A+QTE++F KQP VFL+ KK    KR
Sbjct: 2  AEQTEKAFLKQPKVFLSSKKSGKGKR 27


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score = 90.2 bits (214), Expect = 6e-19
 Identities = 38/54 (70%), Positives = 45/54 (83%)
 Frame = +3

Query: 93  RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
           R+ K++GLGFKTPREAI+G Y+DKKCPFTG VSIRGRIL G     KMQRTI++
Sbjct: 34  RFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIV 87



 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 39/57 (68%), Positives = 47/57 (82%)
 Frame = +2

Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
           RRDYLH++ KY R+EKRH N+  H+SPCFR V+  D + IG+CRPLSKTVRFNVLKV
Sbjct: 88  RRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHIIIGQCRPLSKTVRFNVLKV 143



 Score = 31.9 bits (69), Expect = 0.23
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +1

Query: 1  ADQTERSFQKQPTVFLNRKKGIGVKR 78
          A+QTE++F KQP VFL+ KK    KR
Sbjct: 2  AEQTEKAFLKQPKVFLSSKKSGKGKR 27


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 38/54 (70%), Positives = 44/54 (81%)
 Frame = +3

Query: 93  RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254
           R+ K++GLGFKTPREAI+G YID KCPFTG VSIRGRIL G     KMQRTI++
Sbjct: 34  RFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIV 87



 Score = 87.0 bits (206), Expect = 6e-18
 Identities = 39/57 (68%), Positives = 47/57 (82%)
 Frame = +2

Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424
           RR+YLH++ KY R+EKRH N+  H+SPCFR V+  D V IG+CRPLSKTVRFNVLKV
Sbjct: 88  RRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 143



 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +1

Query: 1  ADQTERSFQKQPTVFLNRK 57
          A+QTE++F KQP VFL+ K
Sbjct: 2  AEQTEKAFLKQPKVFLSSK 20


>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
           to SP|P36175 O-sialoglycoprotein endopeptidase (EC
           3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
           contains Pfam profile PF00814: Glycoprotease family
          Length = 480

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +3

Query: 87  PLRYHKDVGL---GFKTP-REAIEGTYIDKKCP 173
           P++YHKD      G KT  R AIE   ID KCP
Sbjct: 285 PMKYHKDCNFSYAGLKTQVRLAIEAKEIDAKCP 317


>At1g52180.1 68414.m05888 major intrinsic family protein / MIP
           family protein contains Pfam profile: MIP PF00230
          Length = 124

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +3

Query: 150 TYIDKKCPFTGNVSIRG-RILTGVVQKMKMQRTIVIAAITFTTYPNTIGSRNGT-GT-CP 320
           TY++   P +  + I    +  G  Q++ M+  I+  A+ +T Y   I S NGT GT  P
Sbjct: 27  TYLEA-VPTSNAIPIHSVAVRVGSTQRVVME-IIITFALVYTVYATAIDSNNGTLGTIAP 84

Query: 321 YICRLASG 344
              RL  G
Sbjct: 85  LAIRLIVG 92


>At4g02740.1 68417.m00374 F-box family protein contains Pfam
           PF00646: F-box domain; similar to F-box protein FBL2
           (GI:6063090) [Homo sapiens]
          Length = 645

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 105 DVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRIL--TGVVQKMKMQRTIVIAAITFTTY 278
           D+G+GF      ++G  +D     +G+ S+R R++  TG +  + ++ T   + +  T Y
Sbjct: 364 DMGMGFDVDYLLVQGQVLDSASKASGDDSVRDRLIDRTGKLAFLLLESTKRFSRMRATHY 423


>At5g17670.1 68418.m02071 expressed protein
          Length = 309

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 133 RGVLKPRPTSLWYLN 89
           RG L+PRP   WYLN
Sbjct: 86  RGTLRPRPVLDWYLN 100


>At4g26980.1 68417.m03882 expressed protein 
          Length = 343

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 123 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 227
           + PREA+    +D+  PF  ++  +  ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274


>At3g59310.2 68416.m06612 expressed protein identical to
           anthocyanin-related membrane protein 1 [Arabidopsis
           thaliana] GI:16416383; supporting cDNA
           gi|16416382|dbj|AB060644.1|
          Length = 363

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -3

Query: 128 SLETEAHILVVSQRFSVRFTPIPFLRFRKTVGCFW 24
           S     HILV    FS RF   PFLRF  T+  F+
Sbjct: 240 SANQRRHILVYLLHFS-RFQVFPFLRFTLTMFLFY 273


>At3g54090.1 68416.m05980 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 471

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 230 EDAENYRDRRDYLHYLPK 283
           ED +  ++RRDY HY P+
Sbjct: 335 EDFDQTKNRRDYYHYTPE 352


>At2g32120.2 68415.m03926 heat shock protein 70 family protein /
           HSP70 family protein similar to SP|P22953 Heat shock
           cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis
           thaliana}; contains InterPro accession IPR001023: Heat
           shock protein Hsp70
          Length = 563

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 124 LKPRPTS--LWYLNGFLSASHQYLSCGSERL*VVFGM 20
           L P PT+  L Y       +H  +  GSERL V+F M
Sbjct: 199 LMPEPTAIALLYAQQQQMTTHDNMGSGSERLAVIFNM 235


>At2g32120.1 68415.m03925 heat shock protein 70 family protein /
           HSP70 family protein similar to SP|P22953 Heat shock
           cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis
           thaliana}; contains InterPro accession IPR001023: Heat
           shock protein Hsp70
          Length = 563

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 124 LKPRPTS--LWYLNGFLSASHQYLSCGSERL*VVFGM 20
           L P PT+  L Y       +H  +  GSERL V+F M
Sbjct: 199 LMPEPTAIALLYAQQQQMTTHDNMGSGSERLAVIFNM 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,533,472
Number of Sequences: 28952
Number of extensions: 184497
Number of successful extensions: 433
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)