BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV40299 (484 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 93 1e-19 At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 90 6e-19 At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 89 2e-18 At2g45270.1 68415.m05635 glycoprotease M22 family protein simila... 31 0.41 At1g52180.1 68414.m05888 major intrinsic family protein / MIP fa... 28 2.9 At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00... 28 3.8 At5g17670.1 68418.m02071 expressed protein 27 5.0 At4g26980.1 68417.m03882 expressed protein 27 5.0 At3g59310.2 68416.m06612 expressed protein identical to anthocya... 27 5.0 At3g54090.1 68416.m05980 pfkB-type carbohydrate kinase family pr... 27 8.8 At2g32120.2 68415.m03926 heat shock protein 70 family protein / ... 27 8.8 At2g32120.1 68415.m03925 heat shock protein 70 family protein / ... 27 8.8 >At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542 Length = 159 Score = 92.7 bits (220), Expect = 1e-19 Identities = 40/54 (74%), Positives = 47/54 (87%) Frame = +3 Query: 93 RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254 R+ K++GLGFKTPREAIEGTYID+KCPFTG VSIRGRIL+G KMQRTI++ Sbjct: 34 RFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIV 87 Score = 91.5 bits (217), Expect = 3e-19 Identities = 41/57 (71%), Positives = 48/57 (84%) Frame = +2 Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424 RRDYLH++ KY R+EKRH N+ H+SPCFR V+ D VTIG+CRPLSKTVRFNVLKV Sbjct: 88 RRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGDRVTIGQCRPLSKTVRFNVLKV 143 Score = 31.9 bits (69), Expect = 0.23 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = +1 Query: 1 ADQTERSFQKQPTVFLNRKKGIGVKR 78 A+QTE++F KQP VFL+ KK KR Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKR 27 >At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) Length = 160 Score = 90.2 bits (214), Expect = 6e-19 Identities = 38/54 (70%), Positives = 45/54 (83%) Frame = +3 Query: 93 RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254 R+ K++GLGFKTPREAI+G Y+DKKCPFTG VSIRGRIL G KMQRTI++ Sbjct: 34 RFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIV 87 Score = 88.6 bits (210), Expect = 2e-18 Identities = 39/57 (68%), Positives = 47/57 (82%) Frame = +2 Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424 RRDYLH++ KY R+EKRH N+ H+SPCFR V+ D + IG+CRPLSKTVRFNVLKV Sbjct: 88 RRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHIIIGQCRPLSKTVRFNVLKV 143 Score = 31.9 bits (69), Expect = 0.23 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = +1 Query: 1 ADQTERSFQKQPTVFLNRKKGIGVKR 78 A+QTE++F KQP VFL+ KK KR Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKR 27 >At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) Length = 159 Score = 88.6 bits (210), Expect = 2e-18 Identities = 38/54 (70%), Positives = 44/54 (81%) Frame = +3 Query: 93 RYHKDVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVI 254 R+ K++GLGFKTPREAI+G YID KCPFTG VSIRGRIL G KMQRTI++ Sbjct: 34 RFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIV 87 Score = 87.0 bits (206), Expect = 6e-18 Identities = 39/57 (68%), Positives = 47/57 (82%) Frame = +2 Query: 254 RRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEXCDIVTIGECRPLSKTVRFNVLKV 424 RR+YLH++ KY R+EKRH N+ H+SPCFR V+ D V IG+CRPLSKTVRFNVLKV Sbjct: 88 RRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 143 Score = 29.5 bits (63), Expect = 1.2 Identities = 12/19 (63%), Positives = 16/19 (84%) Frame = +1 Query: 1 ADQTERSFQKQPTVFLNRK 57 A+QTE++F KQP VFL+ K Sbjct: 2 AEQTEKAFLKQPKVFLSSK 20 >At2g45270.1 68415.m05635 glycoprotease M22 family protein similar to SP|P36175 O-sialoglycoprotein endopeptidase (EC 3.4.24.57) (Glycoprotease) {Pasteurella haemolytica}; contains Pfam profile PF00814: Glycoprotease family Length = 480 Score = 31.1 bits (67), Expect = 0.41 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%) Frame = +3 Query: 87 PLRYHKDVGL---GFKTP-REAIEGTYIDKKCP 173 P++YHKD G KT R AIE ID KCP Sbjct: 285 PMKYHKDCNFSYAGLKTQVRLAIEAKEIDAKCP 317 >At1g52180.1 68414.m05888 major intrinsic family protein / MIP family protein contains Pfam profile: MIP PF00230 Length = 124 Score = 28.3 bits (60), Expect = 2.9 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Frame = +3 Query: 150 TYIDKKCPFTGNVSIRG-RILTGVVQKMKMQRTIVIAAITFTTYPNTIGSRNGT-GT-CP 320 TY++ P + + I + G Q++ M+ I+ A+ +T Y I S NGT GT P Sbjct: 27 TYLEA-VPTSNAIPIHSVAVRVGSTQRVVME-IIITFALVYTVYATAIDSNNGTLGTIAP 84 Query: 321 YICRLASG 344 RL G Sbjct: 85 LAIRLIVG 92 >At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00646: F-box domain; similar to F-box protein FBL2 (GI:6063090) [Homo sapiens] Length = 645 Score = 27.9 bits (59), Expect = 3.8 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = +3 Query: 105 DVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRIL--TGVVQKMKMQRTIVIAAITFTTY 278 D+G+GF ++G +D +G+ S+R R++ TG + + ++ T + + T Y Sbjct: 364 DMGMGFDVDYLLVQGQVLDSASKASGDDSVRDRLIDRTGKLAFLLLESTKRFSRMRATHY 423 >At5g17670.1 68418.m02071 expressed protein Length = 309 Score = 27.5 bits (58), Expect = 5.0 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -1 Query: 133 RGVLKPRPTSLWYLN 89 RG L+PRP WYLN Sbjct: 86 RGTLRPRPVLDWYLN 100 >At4g26980.1 68417.m03882 expressed protein Length = 343 Score = 27.5 bits (58), Expect = 5.0 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +3 Query: 123 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 227 + PREA+ +D+ PF ++ + ++TGVVQK Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274 >At3g59310.2 68416.m06612 expressed protein identical to anthocyanin-related membrane protein 1 [Arabidopsis thaliana] GI:16416383; supporting cDNA gi|16416382|dbj|AB060644.1| Length = 363 Score = 27.5 bits (58), Expect = 5.0 Identities = 16/35 (45%), Positives = 18/35 (51%) Frame = -3 Query: 128 SLETEAHILVVSQRFSVRFTPIPFLRFRKTVGCFW 24 S HILV FS RF PFLRF T+ F+ Sbjct: 240 SANQRRHILVYLLHFS-RFQVFPFLRFTLTMFLFY 273 >At3g54090.1 68416.m05980 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase Length = 471 Score = 26.6 bits (56), Expect = 8.8 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +2 Query: 230 EDAENYRDRRDYLHYLPK 283 ED + ++RRDY HY P+ Sbjct: 335 EDFDQTKNRRDYYHYTPE 352 >At2g32120.2 68415.m03926 heat shock protein 70 family protein / HSP70 family protein similar to SP|P22953 Heat shock cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis thaliana}; contains InterPro accession IPR001023: Heat shock protein Hsp70 Length = 563 Score = 26.6 bits (56), Expect = 8.8 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -1 Query: 124 LKPRPTS--LWYLNGFLSASHQYLSCGSERL*VVFGM 20 L P PT+ L Y +H + GSERL V+F M Sbjct: 199 LMPEPTAIALLYAQQQQMTTHDNMGSGSERLAVIFNM 235 >At2g32120.1 68415.m03925 heat shock protein 70 family protein / HSP70 family protein similar to SP|P22953 Heat shock cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis thaliana}; contains InterPro accession IPR001023: Heat shock protein Hsp70 Length = 563 Score = 26.6 bits (56), Expect = 8.8 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Frame = -1 Query: 124 LKPRPTS--LWYLNGFLSASHQYLSCGSERL*VVFGM 20 L P PT+ L Y +H + GSERL V+F M Sbjct: 199 LMPEPTAIALLYAQQQQMTTHDNMGSGSERLAVIFNM 235 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,533,472 Number of Sequences: 28952 Number of extensions: 184497 Number of successful extensions: 433 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 420 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 430 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 829097472 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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