Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40298
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462...    32   0.53 
02_05_0345 - 28142434-28142658,28143087-28143158,28143252-281433...    31   1.2  
08_01_0051 - 355392-355450,355507-355634,356271-356425,356883-35...    29   3.7  
01_01_0554 - 4073313-4073332,4073450-4073511,4074624-4074762,407...    29   3.7  
10_01_0102 - 1244294-1245478                                           28   8.6  

>05_01_0536 -
           4622767-4622865,4623550-4623673,4624571-4624685,
           4624784-4625028,4625081-4625316
          Length = 272

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -1

Query: 682 QSRFCRIAV-GAPWFLRNVDLHDDLELDPVSKYLQSAFVRHFA--KTARHENPLVVA-AG 515
           +++F ++AV GAP +LR VDL      D +   LQ  F  HF   K    E  LV A +G
Sbjct: 118 KAKFVKVAVDGAP-YLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEEMKLVDAVSG 176

Query: 514 NYY 506
           N Y
Sbjct: 177 NEY 179


>02_05_0345 -
           28142434-28142658,28143087-28143158,28143252-28143371,
           28143483-28143674,28144919-28145017,28145448-28145594,
           28146310-28146513
          Length = 352

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 706 NPMTAMWVQSRFCRIAVGAPWFLRNVDLHDDLELDPVSKYL 584
           +P   + V  RFC      PW L   +L ++L++DP++KY+
Sbjct: 241 DPSEEIMVLDRFC------PWKLHLFELEEELKIDPLTKYV 275


>08_01_0051 -
           355392-355450,355507-355634,356271-356425,356883-357012,
           357600-357739,358384-358552,360286-360557
          Length = 350

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 561 SRRRHDMRTLLSWPLETTTRSCRSNGKPSTSPKARHHGSS 442
           S +RHD+RT    P  T +R  + N +P   P  R  G++
Sbjct: 22  SSQRHDIRTARPTPNATRSRRDQGNAQPYPPPPPRGPGTT 61


>01_01_0554 -
           4073313-4073332,4073450-4073511,4074624-4074762,
           4074819-4075000,4075097-4075317
          Length = 207

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 679 SRFCRIAV-GAPWFLRNVDLHDDLELDPVSKYLQSAFVRHF 560
           ++F ++AV GAP +LR VDL      D + + LQ  F  HF
Sbjct: 93  AKFVKVAVDGAP-YLRKVDLEAYSGYDQLLRALQDKFFSHF 132


>10_01_0102 - 1244294-1245478
          Length = 394

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 615 TWSSTPSVSIYSRHSCATSRRRHDMRTLLSWPLET 511
           +W +T S+  ++   C+ S  RH  R  L WP+ T
Sbjct: 19  SWKNTTSLCNWTGIMCSRSVIRHGRRHRLPWPVVT 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,846,641
Number of Sequences: 37544
Number of extensions: 314047
Number of successful extensions: 766
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)